(JAL-969) todo test re refactoring and possible change in semantics

diff --git a/src/jalview/bin/JalviewLite.java b/src/jalview/bin/JalviewLite.java
index cff6987..311e48d 100644 (file)
--- a/src/jalview/bin/JalviewLite.java
+++ b/src/jalview/bin/JalviewLite.java
@@ -492,6 +492,8 @@ public class JalviewLite extends Applet implements
       boolean seqlimits = suffix.equalsIgnoreCase("true");\r
       if (alf.viewport.getSelectionGroup() != null)\r
       {\r
+        // JBPNote: getSelectionAsNewSequence behaviour has changed - this method now returns a full copy of sequence data\r
+        // TODO consider using getSequenceSelection instead here\r
         String reply = new AppletFormatAdapter().formatSequences(format,\r
                 new Alignment(alf.viewport.getSelectionAsNewSequence()),\r
                 seqlimits);\r