git://source.jalview.org
/
jalview.git
/ commitdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
| commitdiff |
tree
raw
|
patch
|
inline
| side by side (parent:
48c58bc
)
JAL-3647 release notes for JAL-1842 JAL-3509 JAL-3881, JAL-3884 JAL-3632 JAL-3633...
author
Jim Procter
<j.procter@dundee.ac.uk>
Mon, 7 Mar 2022 20:07:36 +0000
(20:07 +0000)
committer
Jim Procter
<j.procter@dundee.ac.uk>
Mon, 7 Mar 2022 20:07:36 +0000
(20:07 +0000)
help/help/html/releases.html
patch
|
blob
|
history
diff --git
a/help/help/html/releases.html
b/help/help/html/releases.html
index
d5e5dec
..
e3a2a05
100755
(executable)
--- a/
help/help/html/releases.html
+++ b/
help/help/html/releases.html
@@
-100,6
+100,16
@@
li:before {
<!-- JAL-3863 -->Support for Canonical Uniprot IDs
</li>
<li>
<!-- JAL-3863 -->Support for Canonical Uniprot IDs
</li>
<li>
+ <!-- JAL-3881 -->Sequence IDs split on '_' as well as other
+ non-alphanumerics when discovering database references with
+ 'Fetch DB Refs'
+ </li>
+ <li>
+ <!-- JAL-3884 -->Suppressed harmless exceptions output to
+ Console whilst discovering database references for a
+ sequence
+ </li>
+ <li>
<!-- JAL-3204 -->Updated Jalview bindings for Uniprot XML
schema
</li>
<!-- JAL-3204 -->Updated Jalview bindings for Uniprot XML
schema
</li>
@@
-119,6
+129,10
@@
li:before {
textbox
</li>
<li>
textbox
</li>
<li>
+ <!-- JAL-3632 JAL-3633 -->support for HTTP/S access via
+ proxies that require authentication
+ </li>
+ <li>
<!-- JAL-3837 -->GPL license info on splash screen and About
text
</li>
<!-- JAL-3837 -->GPL license info on splash screen and About
text
</li>
@@
-152,7
+166,10
@@
li:before {
macOS, Linux/Unix, Windows and documentation in Help. Installer wizard has option
to add this to PATH, or link to it in your PATH.
</li>
macOS, Linux/Unix, Windows and documentation in Help. Installer wizard has option
to add this to PATH, or link to it in your PATH.
</li>
-
+ <li>
+ <!-- JAL-3633 -->Getdown launcher inherits HTTP/S proxy
+ configuration from jalview_properties
+ </li>
</ul> <em>JalviewJS</em>
<ul>
<li>
</ul> <em>JalviewJS</em>
<ul>
<li>
@@
-257,6
+274,10
@@
li:before {
<!-- JAL-3275 -->Can open multiple Preferences panels
</li>
<li>
<!-- JAL-3275 -->Can open multiple Preferences panels
</li>
<li>
+ <!-- JAL-3633 -->Properly configure HTTPS proxy settings
+ from Preferences
+ </li>
+ <li>
<!-- JAL-3949 -->Standard out logging broken: messages only
routing to stderr and appear as a raw template
</li>
<!-- JAL-3949 -->Standard out logging broken: messages only
routing to stderr and appear as a raw template
</li>
@@
-302,6
+323,14
@@
li:before {
</li>
</ul>
</li>
</ul>
+ <em>Known Issues</em>
+ <ul>
+ <li>
+ <!-- JAL-3764 -->Display of RESNUM sequence features are not
+ suppressed when structures associated with a sequence are
+ viewed with an external viewer (Regression from 2.11.1 series)
+ </li>
+ </ul>
</td>
</tr>
<tr>
</td>
</tr>
<tr>
@@
-544,6
+573,12
@@
li:before {
<!-- JAL-3541 -->Improved support for Hi-DPI (4K) screens
when running on Linux (Requires Java 11+)
</li>
<!-- JAL-3541 -->Improved support for Hi-DPI (4K) screens
when running on Linux (Requires Java 11+)
</li>
+ <li>
+ <!-- JAL-1842 JAL-3509 -->RESNUM sequence features (the
+ green ones) are not automatically displayed when associated
+ structures are displayed or for sequences retrieved from the
+ PDB.
+ </li>
</ul> <em>Launching Jalview</em>
<ul>
<li>
</ul> <em>Launching Jalview</em>
<ul>
<li>
@@
-624,6
+659,11
@@
li:before {
save in place.)
</li>
<li>
save in place.)
</li>
<li>
+ <!-- JAL-3509 -->Dragging a PDB file onto an alignment with
+ sequence features displayed causes displayed features to be
+ hidden.
+ </li>
+ <li>
<!-- JAL-3750 -->Cannot process alignments from HTTPS urls
via command line
</li>
<!-- JAL-3750 -->Cannot process alignments from HTTPS urls
via command line
</li>