When saving, use print instead of println

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 541c9e1..bdcea36 100755 (executable)
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -263,7 +263,8 @@ public class AlignFrame
       {\r
         java.io.PrintWriter out = new java.io.PrintWriter(\r
             new java.io.FileWriter(file));\r
-        out.println(output);\r
+\r
+        out.print(output);\r
         out.close();\r
         return true;\r
       }\r