JAL-3140 update for change to SequenceI api

diff --git a/src/jalview/commands/EditCommand.java b/src/jalview/commands/EditCommand.java
index 1a227c5..f80bd4a 100644 (file)
--- a/src/jalview/commands/EditCommand.java
+++ b/src/jalview/commands/EditCommand.java
@@ -24,6 +24,7 @@ import jalview.analysis.AlignSeq;
 import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.Annotation;
+import jalview.datamodel.ContiguousI;
 import jalview.datamodel.Range;
 import jalview.datamodel.Sequence;
 import jalview.datamodel.SequenceFeature;
@@ -526,8 +527,8 @@ public class EditCommand implements CommandI
         command.string[i] = sequence.getSequence(command.position,
                 command.position + command.number);
         SequenceI oldds = sequence.getDatasetSequence();
-        Range cutPositions = sequence.findPositions(command.position + 1,
-                command.position + command.number);
+        ContiguousI cutPositions = sequence.findPositions(
+                command.position + 1, command.position + command.number);
         boolean cutIsInternal = cutPositions != null
                 && sequence.getStart() != cutPositions
                 .getBegin() && sequence.getEnd() != cutPositions.getEnd();
@@ -763,9 +764,9 @@ public class EditCommand implements CommandI
        * EditCommand.PASTE, sequences, 0, alignment.getWidth(), alignment) );
        * 
        */
-
-      Range beforeEditedPositions = command.seqs[i].findPositions(1, start);
-      Range afterEditedPositions = command.seqs[i]
+      ContiguousI beforeEditedPositions = command.seqs[i].findPositions(1,
+              start);
+      ContiguousI afterEditedPositions = command.seqs[i]
               .findPositions(end + 1, command.seqs[i].getLength());
       
       oldstring = command.seqs[i].getSequenceAsString();