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JAL-2827 related fixes for stem and non-canonical annotation
bug/JAL-2827
author
kiramt
<k.mourao@dundee.ac.uk>
Fri, 10 Nov 2017 10:08:50 +0000
(10:08 +0000)
committer
kiramt
<k.mourao@dundee.ac.uk>
Fri, 10 Nov 2017 10:08:50 +0000
(10:08 +0000)
src/jalview/renderer/AnnotationRenderer.java
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diff --git
a/src/jalview/renderer/AnnotationRenderer.java
b/src/jalview/renderer/AnnotationRenderer.java
index
683ca78
..
8a80d41
100644
(file)
--- a/
src/jalview/renderer/AnnotationRenderer.java
+++ b/
src/jalview/renderer/AnnotationRenderer.java
@@
-162,7
+162,8
@@
public class AnnotationRenderer
boolean validRes, boolean validEnd)
{
g.setColor(STEM_COLOUR);
boolean validRes, boolean validEnd)
{
g.setColor(STEM_COLOUR);
- int sCol = (lastSSX / charWidth) + startRes;
+ int sCol = (lastSSX / charWidth)
+ + hiddenColumns.adjustForHiddenColumns(startRes);
int x1 = lastSSX;
int x2 = (x * charWidth);
int x1 = lastSSX;
int x2 = (x * charWidth);
@@
-228,7
+229,8
@@
public class AnnotationRenderer
// System.out.println(nonCanColor);
g.setColor(nonCanColor);
// System.out.println(nonCanColor);
g.setColor(nonCanColor);
- int sCol = (lastSSX / charWidth) + startRes;
+ int sCol = (lastSSX / charWidth)
+ + hiddenColumns.adjustForHiddenColumns(startRes);
int x1 = lastSSX;
int x2 = (x * charWidth);
int x1 = lastSSX;
int x2 = (x * charWidth);