* @version $Revision: 1.155 $
*/
public class Desktop extends jalview.jbgui.GDesktop implements
- DropTargetListener, ClipboardOwner, IProgressIndicator, jalview.api.StructureSelectionManagerProvider
+ DropTargetListener, ClipboardOwner, IProgressIndicator,
+ jalview.api.StructureSelectionManagerProvider
{
private JalviewChangeSupport changeSupport = new JalviewChangeSupport();
/**
* news reader - null if it was never started.
*/
- private BlogReader jvnews=null;
+ private BlogReader jvnews = null;
/**
* @param listener
public void dragFrame(JComponent f, int newX, int newY)
{
- if (newY<0)
+ if (newY < 0)
{
- newY=0;
+ newY = 0;
}
delegate.dragFrame(f, newX, newY);
}
public void resizeFrame(JComponent f, int newX, int newY, int newWidth,
int newHeight)
{
- Rectangle b=desktop.getBounds();
- if (newY<0)
+ Rectangle b = desktop.getBounds();
+ if (newY < 0)
{
- newY=0;
+ newY = 0;
}
delegate.resizeFrame(f, newX, newY, newWidth, newHeight);
}
desktop.setBackground(Color.white);
getContentPane().setLayout(new BorderLayout());
// alternate config - have scrollbars - see notes in JAL-153
- //JScrollPane sp = new JScrollPane();
- //sp.getViewport().setView(desktop);
- //getContentPane().add(sp, BorderLayout.CENTER);
+ // JScrollPane sp = new JScrollPane();
+ // sp.getViewport().setView(desktop);
+ // getContentPane().add(sp, BorderLayout.CENTER);
getContentPane().add(desktop, BorderLayout.CENTER);
desktop.setDragMode(JDesktopPane.OUTLINE_DRAG_MODE);
-
-
+
// This line prevents Windows Look&Feel resizing all new windows to maximum
// if previous window was maximised
desktop.setDesktopManager(new MyDesktopManager(
new DefaultDesktopManager()));
-
+
Rectangle dims = getLastKnownDimensions("");
if (dims != null)
{
showConsole(showjconsole);
showNews.setVisible(false);
-
+
this.addWindowListener(new WindowAdapter()
{
public void windowClosing(WindowEvent evt)
});
MouseAdapter ma;
- this.addMouseListener(ma=new MouseAdapter()
+ this.addMouseListener(ma = new MouseAdapter()
{
public void mousePressed(MouseEvent evt)
{
}
});
desktop.addMouseListener(ma);
-
+
this.addFocusListener(new FocusListener()
{
-
+
@Override
public void focusLost(FocusEvent e)
{
// TODO Auto-generated method stub
-
+
}
-
+
@Override
public void focusGained(FocusEvent e)
{
{
final Desktop me = this;
// Thread off the news reader, in case there are connection problems.
- addDialogThread(new Runnable() {
+ addDialogThread(new Runnable()
+ {
@Override
public void run()
{
}
});
}
+
protected void showNews_actionPerformed(ActionEvent e)
{
showNews(showNews.isSelected());
}
+
void showNews(boolean visible)
{
{
- Cache.log.debug((visible?"Showing":"Hiding")+" news.");
+ Cache.log.debug((visible ? "Showing" : "Hiding") + " news.");
showNews.setSelected(visible);
if (visible && !jvnews.isVisible())
{
- new Thread(new Runnable() {
+ new Thread(new Runnable()
+ {
@Override
public void run()
{
- long instance=System.currentTimeMillis();
+ long instance = System.currentTimeMillis();
Desktop.instance.setProgressBar("Refreshing news", instance);
jvnews.refreshNews();
Desktop.instance.setProgressBar(null, instance);
});
menuItem.addMouseListener(new MouseListener()
{
-
+
@Override
public void mouseReleased(MouseEvent e)
{
}
-
+
@Override
public void mousePressed(MouseEvent e)
{
}
-
+
@Override
public void mouseExited(MouseEvent e)
{
{
}
}
-
+
@Override
public void mouseEntered(MouseEvent e)
{
{
}
}
-
+
@Override
public void mouseClicked(MouseEvent e)
{
-
+
}
});
frame.requestFocus();
} catch (java.beans.PropertyVetoException ve)
{
- }
- catch (java.lang.ClassCastException cex)
+ } catch (java.lang.ClassCastException cex)
{
- Cache.log.warn("Squashed a possible GUI implementation error. If you can recreate this, please look at http://issues.jalview.org/browse/JAL-869",cex);
+ Cache.log
+ .warn("Squashed a possible GUI implementation error. If you can recreate this, please look at http://issues.jalview.org/browse/JAL-869",
+ cex);
}
}
storeLastKnownDimensions("JAVA_CONSOLE_", jconsole.getBounds());
jconsole.stopConsole();
}
- if (jvnews!=null)
+ if (jvnews != null)
{
storeLastKnownDimensions("JALVIEW_RSS_WINDOW_", jvnews.getBounds());
-
+
}
- if (dialogExecutor!=null)
+ if (dialogExecutor != null)
{
dialogExecutor.shutdownNow();
}
-
+
System.exit(0);
}
*/
public void aboutMenuItem_actionPerformed(ActionEvent e)
{
-// StringBuffer message = getAboutMessage(false);
-// JOptionPane.showInternalMessageDialog(Desktop.desktop,
-//
-// message.toString(), "About Jalview", JOptionPane.INFORMATION_MESSAGE);
- new Thread(new Runnable() { public void run() {new SplashScreen(true);}}).start();
+ // StringBuffer message = getAboutMessage(false);
+ // JOptionPane.showInternalMessageDialog(Desktop.desktop,
+ //
+ // message.toString(), "About Jalview", JOptionPane.INFORMATION_MESSAGE);
+ new Thread(new Runnable()
+ {
+ public void run()
+ {
+ new SplashScreen(true);
+ }
+ }).start();
}
public StringBuffer getAboutMessage(boolean shortv)
public void run()
{
- setProgressBar("Saving jalview project " + choice.getName(),
- choice.hashCode());
- jalview.bin.Cache.setProperty("LAST_DIRECTORY", choice.getParent());
- // TODO catch and handle errors for savestate
- // TODO prevent user from messing with the Desktop whilst we're saving
- try
- {
- new Jalview2XML().SaveState(choice);
- } catch (OutOfMemoryError oom)
- {
- new OOMWarning(
- "Whilst saving current state to " + choice.getName(), oom);
- } catch (Exception ex)
- {
- Cache.log
- .error("Problems whilst trying to save to "
- + choice.getName(), ex);
- JOptionPane.showMessageDialog(me,
- "Error whilst saving current state to " + choice.getName(),
- "Couldn't save project", JOptionPane.WARNING_MESSAGE);
- }
- setProgressBar(null, choice.hashCode());
+ setProgressBar("Saving jalview project " + choice.getName(),
+ choice.hashCode());
+ jalview.bin.Cache.setProperty("LAST_DIRECTORY",
+ choice.getParent());
+ // TODO catch and handle errors for savestate
+ // TODO prevent user from messing with the Desktop whilst we're saving
+ try
+ {
+ new Jalview2XML().SaveState(choice);
+ } catch (OutOfMemoryError oom)
+ {
+ new OOMWarning("Whilst saving current state to "
+ + choice.getName(), oom);
+ } catch (Exception ex)
+ {
+ Cache.log.error(
+ "Problems whilst trying to save to " + choice.getName(),
+ ex);
+ JOptionPane.showMessageDialog(
+ me,
+ "Error whilst saving current state to "
+ + choice.getName(), "Couldn't save project",
+ JOptionPane.WARNING_MESSAGE);
+ }
+ setProgressBar(null, choice.hashCode());
}
}).start();
}
}
JPanel progressPanel;
- ArrayList<JPanel> fileLoadingPanels=new ArrayList<JPanel>();
+
+ ArrayList<JPanel> fileLoadingPanels = new ArrayList<JPanel>();
+
public void startLoading(final String fileName)
{
if (fileLoadingCount == 0)
{
- fileLoadingPanels.add(addProgressPanel("Loading File: " + fileName + " "));
+ fileLoadingPanels.add(addProgressPanel("Loading File: " + fileName
+ + " "));
}
fileLoadingCount++;
}
{
if (progressPanel == null)
{
- progressPanel = new JPanel(new GridLayout(1,1));
+ progressPanel = new JPanel(new GridLayout(1, 1));
totalProgressCount = 0;
instance.getContentPane().add(progressPanel, BorderLayout.SOUTH);
}
- JPanel thisprogress=new JPanel(new BorderLayout(10,5));
+ JPanel thisprogress = new JPanel(new BorderLayout(10, 5));
JProgressBar progressBar = new JProgressBar();
progressBar.setIndeterminate(true);
thisprogress.add(progressBar, BorderLayout.CENTER);
progressPanel.add(thisprogress);
- ((GridLayout)progressPanel.getLayout()).setRows(((GridLayout)progressPanel.getLayout()).getRows()+1);
+ ((GridLayout) progressPanel.getLayout())
+ .setRows(((GridLayout) progressPanel.getLayout()).getRows() + 1);
++totalProgressCount;
instance.validate();
return thisprogress;
{
progressPanel.remove(progbar);
GridLayout gl = (GridLayout) progressPanel.getLayout();
- gl.setRows(gl.getRows()-1);
+ gl.setRows(gl.getRows() - 1);
if (--totalProgressCount < 1)
{
this.getContentPane().remove(progressPanel);
AlignFrame af = (AlignFrame) frames[t];
for (int a = 0; a < af.alignPanels.size(); a++)
{
- if (alignmentId
- .equals(((AlignmentPanel) af.alignPanels.elementAt(a)).av
- .getSequenceSetId()))
+ if (alignmentId.equals(((AlignmentPanel) af.alignPanels
+ .elementAt(a)).av.getSequenceSetId()))
{
aps.add(af.alignPanels.elementAt(a));
}
}
/**
- * fixes stacking order after a modal dialog to ensure windows that should be on top actually are
+ * fixes stacking order after a modal dialog to ensure windows that should be
+ * on top actually are
*/
public void relayerWindows()
{
-
+
}
protected JMenuItem groovyShell;
avp.clear();
return afs;
}
+
public AppJmol[] getJmols()
{
JInternalFrame[] frames = Desktop.desktop.getAllFrames();
/**
* Progress bars managed by the IProgressIndicator method.
*/
- private Hashtable<Long,JPanel> progressBars;
- private Hashtable<Long,IProgressIndicatorHandler> progressBarHandlers;
+ private Hashtable<Long, JPanel> progressBars;
+
+ private Hashtable<Long, IProgressIndicatorHandler> progressBarHandlers;
/*
* (non-Javadoc)
{
if (progressBars == null)
{
- progressBars = new Hashtable<Long,JPanel>();
- progressBarHandlers = new Hashtable<Long,IProgressIndicatorHandler>();
+ progressBars = new Hashtable<Long, JPanel>();
+ progressBarHandlers = new Hashtable<Long, IProgressIndicatorHandler>();
}
if (progressBars.get(new Long(id)) != null)
{
- JPanel progressPanel = progressBars
- .remove(new Long(id));
+ JPanel progressPanel = progressBars.remove(new Long(id));
if (progressBarHandlers.contains(new Long(id)))
{
progressBarHandlers.remove(new Long(id));
// register PCS handler for desktop.
discoverer.addPropertyChangeListener(changeSupport);
}
- // JAL-940 - disabled JWS1 service configuration - always start discoverer until we phase out completely
+ // JAL-940 - disabled JWS1 service configuration - always start discoverer
+ // until we phase out completely
if (true)
{
(t0 = new Thread(discoverer)).start();
}
t2 = jalview.ws.jws2.Jws2Discoverer.getDiscoverer().startDiscoverer(
changeSupport);
-
+
}
- Thread t3=null;
+ Thread t3 = null;
{
// TODO: do rest service discovery
}
{
showUrl(url, Desktop.instance);
}
+
/**
* Like showUrl but allows progress handler to be specified
+ *
* @param url
- * @param progress (null) or object implementing IProgressIndicator
+ * @param progress
+ * (null) or object implementing IProgressIndicator
*/
- public static void showUrl(final String url, final IProgressIndicator progress)
+ public static void showUrl(final String url,
+ final IProgressIndicator progress)
{
new Thread(new Runnable()
{
{
try
{
- if (progress!=null) {
- progress.setProgressBar("Opening "+url, this.hashCode());
+ if (progress != null)
+ {
+ progress.setProgressBar("Opening " + url, this.hashCode());
}
jalview.util.BrowserLauncher.openURL(url);
} catch (Exception ex)
ex.printStackTrace();
}
- if (progress!=null) {
+ if (progress != null)
+ {
progress.setProgressBar(null, this.hashCode());
}
}
}
/**
- * static hyperlink handler proxy method for use by Jalview's internal windows
+ * static hyperlink handler proxy method for use by Jalview's internal windows
+ *
* @param e
*/
public static void hyperlinkUpdate(HyperlinkEvent e)
{
if (e.getEventType() == EventType.ACTIVATED)
{
- String url=null;
+ String url = null;
try
{
url = e.getURL().toString();
Desktop.showUrl(url);
} catch (Exception x)
{
- if (url!=null) {
- if (Cache.log!=null) {
- Cache.log.error("Couldn't handle string "+url+" as a URL.");
- } else {
- System.err.println("Couldn't handle string "+url+" as a URL.");
+ if (url != null)
+ {
+ if (Cache.log != null)
+ {
+ Cache.log.error("Couldn't handle string " + url + " as a URL.");
+ }
+ else
+ {
+ System.err.println("Couldn't handle string " + url
+ + " as a URL.");
}
}
// ignore any exceptions due to dud links.
}
- }
+ }
}
+
/**
* single thread that handles display of dialogs to user.
*/
- ExecutorService dialogExecutor=Executors.newSingleThreadExecutor();
+ ExecutorService dialogExecutor = Executors.newSingleThreadExecutor();
+
/**
* flag indicating if dialogExecutor should try to acquire a permit
*/
- private volatile boolean dialogPause=true;
+ private volatile boolean dialogPause = true;
+
/**
- * pause the queue
+ * pause the queue
*/
- private java.util.concurrent.Semaphore block=new Semaphore(0);
-
+ private java.util.concurrent.Semaphore block = new Semaphore(0);
+
/**
* add another dialog thread to the queue
+ *
* @param prompter
*/
public void addDialogThread(final Runnable prompter)
{
public void run()
{
- if (dialogPause) {
- try { block.acquire(); } catch (InterruptedException x){};
+ if (dialogPause)
+ {
+ try
+ {
+ block.acquire();
+ } catch (InterruptedException x)
+ {
+ }
+ ;
}
- if (instance==null)
+ if (instance == null)
{
return;
}
public void startDialogQueue()
{
- // set the flag so we don't pause waiting for another permit and semaphore the current task to begin
- dialogPause=false;
+ // set the flag so we don't pause waiting for another permit and semaphore
+ // the current task to begin
+ dialogPause = false;
block.release();
}
}
git://source.jalview.org / jalview.git / commitdiff