// but defer colourscheme update until hidden sequences are passed in
boolean vischange = stretchGroup.recalcConservation(true);
// here we rely on stretchGroup == av.getSelection()
// but defer colourscheme update until hidden sequences are passed in
boolean vischange = stretchGroup.recalcConservation(true);
// here we rely on stretchGroup == av.getSelection()
if (stretchGroup.cs != null)
{
stretchGroup.cs.alignmentChanged(stretchGroup,
if (stretchGroup.cs != null)
{
stretchGroup.cs.alignmentChanged(stretchGroup,