JAL-629 Add accessors for argParser and bootstrapArgs

diff --git a/src/jalview/bin/Console.java b/src/jalview/bin/Console.java
index 20926cd..1b230ec 100644 (file)
--- a/src/jalview/bin/Console.java
+++ b/src/jalview/bin/Console.java
@@ -337,8 +337,8 @@ public class Console
   {
     // send message to stderr if an output file to stdout is expected
     if (!forceStdout && Jalview.getInstance() != null
-            && Jalview.getInstance().bootstrapArgs != null
-            && Jalview.getInstance().bootstrapArgs.outputToStdout())
+            && Jalview.getInstance().getBootstrapArgs() != null
+            && Jalview.getInstance().getBootstrapArgs().outputToStdout())
     {
       return System.err;
     }

diff --git a/src/jalview/bin/Jalview.java b/src/jalview/bin/Jalview.java
index 6c33812..af638c8 100755 (executable)
--- a/src/jalview/bin/Jalview.java
+++ b/src/jalview/bin/Jalview.java
@@ -139,9 +139,9 @@ public class Jalview
 
   public static AlignFrame currentAlignFrame;
 
-  public ArgParser argparser = null;
+  private ArgParser argparser = null;
 
-  public BootstrapArgs bootstrapArgs = null;
+  private BootstrapArgs bootstrapArgs = null;
 
   private boolean QUIET = false;
 
@@ -1952,4 +1952,15 @@ public class Jalview
     }
     Console.outPrintln("[TESTOUTPUT] arg " + message);
   }
+
+  public ArgParser getArgParser()
+  {
+    return argparser;
+  }
+
+  public BootstrapArgs getBootstrapArgs()
+  {
+    return bootstrapArgs;
+  }
+
 }