right to insert gaps and remove gaps.<br> If the current
selection is a group over all sequences in the alignment, or a group
over some sequences or all columns in the alignment, then hold down
- either "Control" key (or the "Alt;" on OSX if
- "Control" does not work) and drag the residue left or
- right to edit all sequences in the defined group at once.
+ "Control" key ("Cmd" key on OSX) and drag the residue
+ left or right to edit all sequences in the defined group at once.
</p>
<p>
<em>Copy/paste/cut/delete</em> - any sequences which are in the
</td>
<td><em>Application</em>
<ul>
- <li>3D Structure chooser opens with 'Cached structures' view if structures already loaded</li>
- <li>Progress bar reports models as they are loaded to structure views</li>
+ <li>3D Structure chooser opens with 'Cached structures'
+ view if structures already loaded</li>
+ <li>Progress bar reports models as they are loaded to
+ structure views</li>
</ul></td>
<td>
<div align="left">
<em>General</em>
<ul>
- <li>Colour by conservation always enabled and no tick shown in menu when PID shading applied</li>
+ <li>Colour by conservation always enabled and no tick
+ shown in menu when BLOSUM or PID shading applied</li>
</ul>
<em>Application</em>
<ul>
- <li>Jalview projects with views of local PDB structure files saved on Windows cannot be opened on OSX</li>
- <li>Multiple structure views can be opened and superposed without timeout for structures with multiple models or multiple sequences in alignment</li>
- <li>Cannot import or associated local PDB files without a PDB ID HEADER line</li>
- <li>RMSD is not output in Jmol console when superposition is performed</li>
- <li>Drag and drop of URL from Browser fails for Linux and OSX versions earlier than El Capitan</li>
+ <li>Jalview projects with views of local PDB structure
+ files saved on Windows cannot be opened on OSX</li>
+ <li>Multiple structure views can be opened and
+ superposed without timeout for structures with multiple
+ models or multiple sequences in alignment</li>
+ <li>Cannot import or associated local PDB files without
+ a PDB ID HEADER line</li>
+ <li>RMSD is not output in Jmol console when
+ superposition is performed</li>
+ <li>Drag and drop of URL from Browser fails for Linux
+ and OSX versions earlier than El Capitan</li>
<li>ENA client ignores invalid content from ENA server</li>
- <li>Exceptions are not raised in console when ENA client attempts to fetch non-existent IDs via Fetch DB Refs UI option</li>
- <li>Exceptions are not raised in console when a new view is created on the alignment</li>
+ <li>Exceptions are not raised in console when ENA
+ client attempts to fetch non-existent IDs via Fetch DB
+ Refs UI option</li>
+ <li>Exceptions are not raised in console when a new
+ view is created on the alignment</li>
+ <li>OSX right-click fixed for group selections:
+ CMD-click to insert/remove gaps in groups and CTRL-click
+ to open group pop-up menu</li>
</ul>
- <em>New Known Issues</em>
- <ul><li>Drag and drop from URL links in browsers do not work on Windows</li></ul>
<em>Build and deployment</em>
- <ul><li>URL link checker now copes with multi-line anchor tags</li></ul>
+ <ul>
+ <li>URL link checker now copes with multi-line anchor
+ tags</li>
+ </ul>
+ <em>New Known Issues</em>
+ <ul>
+ <li>Drag and drop from URL links in browsers do not
+ work on Windows</li>
+ </ul>
</div>
</td>
</tr>
/*
* test for JAL-2283 don't inadvertently turn on colour by conservation
*/
- Cache.applicationProperties.setProperty("SHOW_ANNOTATIONS",
- Boolean.TRUE.toString());
- Cache.applicationProperties.setProperty("SHOW_CONSERVATION",
- Boolean.FALSE.toString());
Cache.applicationProperties.setProperty("DEFAULT_COLOUR_PROT", "NONE");
+ Cache.applicationProperties.setProperty("SHOW_CONSERVATION",
+ Boolean.TRUE.toString());
AlignFrame af = new FileLoader().LoadFileWaitTillLoaded(
"examples/uniref50.fa", FormatAdapter.FILE);
ColourSchemeI cs = new PIDColourScheme();