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minor translation bug
author
jprocter
<Jim Procter>
Wed, 12 Nov 2008 11:27:44 +0000
(11:27 +0000)
committer
jprocter
<Jim Procter>
Wed, 12 Nov 2008 11:27:44 +0000
(11:27 +0000)
src/jalview/analysis/Dna.java
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diff --git
a/src/jalview/analysis/Dna.java
b/src/jalview/analysis/Dna.java
index
8bf8962
..
30bc378
100644
(file)
--- a/
src/jalview/analysis/Dna.java
+++ b/
src/jalview/analysis/Dna.java
@@
-515,11
+515,14
@@
public class Dna
codons.codons[aspos] = new int[]
\r
{ cdp[0], cdp[1], cdp[2] };
\r
}
\r
codons.codons[aspos] = new int[]
\r
{ cdp[0], cdp[1], cdp[2] };
\r
}
\r
- aspos++;
\r
if (aspos >= codons.aaWidth)
\r
{
\r
if (aspos >= codons.aaWidth)
\r
{
\r
- codons.aaWidth = aspos + 1;
\r
+ // update maximum alignment width
\r
+ // (we can do this without calling checkCodonFrameWidth because it was already done above)
\r
+ codons.setAaWidth(aspos);
\r
}
\r
}
\r
+ // ready for next translated reading frame alignment position (if any)
\r
+ aspos++;
\r
}
\r
}
\r
if (resSize > 0)
\r
}
\r
}
\r
if (resSize > 0)
\r