JAL-3783 Updated groovy jars. Requires javaparser-core library to run too

diff --git a/j11lib/groovy-2.5.23.jar b/j11lib/groovy-2.5.23.jar
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diff --git a/j11lib/groovy-4.0.15.jar b/j11lib/groovy-4.0.15.jar
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diff --git a/j11lib/groovy-cli-commons-2.5.23.jar b/j11lib/groovy-cli-commons-2.5.23.jar
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diff --git a/j11lib/groovy-cli-commons-4.0.15.jar b/j11lib/groovy-cli-commons-4.0.15.jar
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diff --git a/j11lib/groovy-cli-picocli-2.5.23.jar b/j11lib/groovy-cli-picocli-2.5.23.jar
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diff --git a/j11lib/groovy-cli-picocli-4.0.15.jar b/j11lib/groovy-cli-picocli-4.0.15.jar
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diff --git a/j11lib/groovy-console-2.5.23.jar b/j11lib/groovy-console-2.5.23.jar
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diff --git a/j11lib/groovy-contracts-4.0.15.jar b/j11lib/groovy-contracts-4.0.15.jar
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diff --git a/j11lib/groovy-datetime-4.0.15.jar b/j11lib/groovy-datetime-4.0.15.jar
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diff --git a/j11lib/groovy-docgenerator-2.5.23.jar b/j11lib/groovy-docgenerator-2.5.23.jar
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diff --git a/j11lib/groovy-docgenerator-4.0.15.jar b/j11lib/groovy-docgenerator-4.0.15.jar
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diff --git a/j11lib/groovy-ginq-4.0.15.jar b/j11lib/groovy-ginq-4.0.15.jar
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diff --git a/j11lib/groovy-groovydoc-2.5.23.jar b/j11lib/groovy-groovydoc-2.5.23.jar
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diff --git a/j11lib/groovy-groovydoc-4.0.15.jar b/j11lib/groovy-groovydoc-4.0.15.jar
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diff --git a/j11lib/groovy-groovysh-2.5.23.jar b/j11lib/groovy-groovysh-2.5.23.jar
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diff --git a/j11lib/groovy-jaxb-2.5.23.jar b/j11lib/groovy-jaxb-2.5.23.jar
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diff --git a/j11lib/groovy-jmx-2.5.23.jar b/j11lib/groovy-jmx-2.5.23.jar
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diff --git a/j11lib/groovy-jmx-4.0.15.jar b/j11lib/groovy-jmx-4.0.15.jar
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diff --git a/j11lib/groovy-json-2.5.23.jar b/j11lib/groovy-json-2.5.23.jar
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diff --git a/j11lib/groovy-json-4.0.15.jar b/j11lib/groovy-json-4.0.15.jar
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diff --git a/j11lib/groovy-json-direct-2.5.23.jar b/j11lib/groovy-json-direct-2.5.23.jar
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diff --git a/j11lib/groovy-jsr223-2.5.23.jar b/j11lib/groovy-jsr223-2.5.23.jar
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diff --git a/j11lib/groovy-jsr223-4.0.15.jar b/j11lib/groovy-jsr223-4.0.15.jar
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diff --git a/j11lib/groovy-macro-2.5.23.jar b/j11lib/groovy-macro-2.5.23.jar
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diff --git a/j11lib/groovy-macro-4.0.15.jar b/j11lib/groovy-macro-4.0.15.jar
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diff --git a/j11lib/groovy-macro-library-4.0.15.jar b/j11lib/groovy-macro-library-4.0.15.jar
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diff --git a/j11lib/groovy-nio-2.5.23.jar b/j11lib/groovy-nio-2.5.23.jar
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diff --git a/j11lib/groovy-servlet-2.5.23.jar b/j11lib/groovy-servlet-2.5.23.jar
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diff --git a/j11lib/groovy-servlet-4.0.15.jar b/j11lib/groovy-servlet-4.0.15.jar
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diff --git a/j11lib/groovy-sql-2.5.23.jar b/j11lib/groovy-sql-2.5.23.jar
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diff --git a/j11lib/groovy-swing-2.5.23.jar b/j11lib/groovy-swing-2.5.23.jar
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diff --git a/j11lib/groovy-swing-4.0.15.jar b/j11lib/groovy-swing-4.0.15.jar
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diff --git a/j11lib/groovy-templates-2.5.23.jar b/j11lib/groovy-templates-2.5.23.jar
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diff --git a/j11lib/groovy-templates-4.0.15.jar b/j11lib/groovy-templates-4.0.15.jar
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diff --git a/j11lib/groovy-test-2.5.23.jar b/j11lib/groovy-test-2.5.23.jar
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diff --git a/j11lib/groovy-test-4.0.15.jar b/j11lib/groovy-test-4.0.15.jar
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diff --git a/j11lib/groovy-toml-4.0.15.jar b/j11lib/groovy-toml-4.0.15.jar
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diff --git a/j11lib/groovy-typecheckers-4.0.15.jar b/j11lib/groovy-typecheckers-4.0.15.jar
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diff --git a/j11lib/groovy-xml-2.5.23.jar b/j11lib/groovy-xml-2.5.23.jar
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diff --git a/j11lib/groovy-yaml-4.0.15.jar b/j11lib/groovy-yaml-4.0.15.jar
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diff --git a/j11lib/javaparser-core-3.25.5.jar b/j11lib/javaparser-core-3.25.5.jar
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diff --git a/j8lib/groovy-2.5.23.jar b/j8lib/groovy-2.5.23.jar
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diff --git a/j8lib/groovy-4.0.15.jar b/j8lib/groovy-4.0.15.jar
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diff --git a/j8lib/groovy-cli-commons-4.0.15.jar b/j8lib/groovy-cli-commons-4.0.15.jar
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diff --git a/j8lib/groovy-yaml-4.0.15.jar b/j8lib/groovy-yaml-4.0.15.jar
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diff --git a/j8lib/javaparser-core-3.25.5.jar b/j8lib/javaparser-core-3.25.5.jar
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diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index f3cb012..00bd4f9 100644 (file)
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -5964,7 +5964,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
   protected void runGroovy_actionPerformed()
   {
     Jalview.setCurrentAlignFrame(this);
-    groovy.ui.Console console = Desktop.getGroovyConsole();
+    groovy.console.ui.Console console = Desktop.getGroovyConsole();
     if (console != null)
     {
       try

diff --git a/src/jalview/gui/Desktop.java b/src/jalview/gui/Desktop.java
index ab5800c..0ebc58b 100644 (file)
--- a/src/jalview/gui/Desktop.java
+++ b/src/jalview/gui/Desktop.java
@@ -2624,7 +2624,7 @@ public class Desktop extends jalview.jbgui.GDesktop
       openGroovyConsole();
     } catch (Exception ex)
     {
-      jalview.bin.Console.error("Groovy Shell Creation failed.", ex);
+      jalview.bin.Console.error("Groovy Console creation failed.", ex);
       JvOptionPane.showInternalMessageDialog(Desktop.desktop,
 
               MessageManager.getString("label.couldnt_create_groovy_shell"),
@@ -2640,7 +2640,7 @@ public class Desktop extends jalview.jbgui.GDesktop
   {
     if (groovyConsole == null)
     {
-      groovyConsole = new groovy.ui.Console();
+      groovyConsole = new groovy.console.ui.Console();
       groovyConsole.setVariable("Jalview", this);
       groovyConsole.run();
 
@@ -3123,7 +3123,7 @@ public class Desktop extends jalview.jbgui.GDesktop
    */
   private Semaphore block = new Semaphore(0);
 
-  private static groovy.ui.Console groovyConsole;
+  private static groovy.console.ui.Console groovyConsole;
 
   /**
    * add another dialog thread to the queue
@@ -3385,7 +3385,7 @@ public class Desktop extends jalview.jbgui.GDesktop
     myTopFrame.setDisplayedView(myTopFrame.alignPanel);
   }
 
-  public static groovy.ui.Console getGroovyConsole()
+  public static groovy.console.ui.Console getGroovyConsole()
   {
     return groovyConsole;
   }