Merge branch 'releases/Release_2_10_4_Branch' into develop

diff --git a/.classpath b/.classpath
index c85feaf..17523b9 100644 (file)
--- a/.classpath
+++ b/.classpath
@@ -69,5 +69,6 @@
        <classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8"/>
        <classpathentry kind="lib" path="lib/htsjdk-2.12.0.jar"/>
        <classpathentry kind="lib" path="lib/groovy-all-2.4.12-indy.jar"/>
+       <classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8"/>
        <classpathentry kind="output" path="classes"/>
 </classpath>

diff --git a/build.xml b/build.xml
index d636a42..0088485 100755 (executable)
--- a/build.xml
+++ b/build.xml
@@ -38,7 +38,7 @@
     <echo message="testng - run jalview's tests via testNG. Default group is '${testng-groups}'" />
     <echo message="      you can specify particular test groups as a list via -Dtestng-groups=" />
     <echo message="See docs/building.html and the comments in build file for other targets." />
-    <echo message="note: compile and makeApplet require the property java118.home to be set to point to a java 1.1.8 jdk." />
+    <echo message="note: compile and makeApplet optionally compile/obfuscate applet against a different Java version by specifying -Djava118.home=<Path to JDK>/lib which is the lib directory in the JDK install that contains rt.jar " />
     <echo message="Useful -D flags: -Ddonotobfuscate will prevent applet obfuscation" />
   </target>
 
@@ -182,17 +182,14 @@
     </path>
     <property name="source.dist.name" value="${basedir}/jalview-src.tar.gz" />
     <!-- The Location of the java 1.1.8 jdk -->
-    <!--<property name="java118.home" value="C:\Sun\jdk1.1.8" /> -->
     <property name="java118.home" value="${java.home}" />
-    <!-- <property name="applet.jre.tools" value="${java118.home}/lib/classes.zip" />
-               -->
     <!-- jre for 1.4 version -->
-    <property name="applet.jre.tools" value="${java.home}/lib/rt.jar" />
+    <property name="applet.jre.tools" value="${java118.home}/lib/rt.jar" />
 
     <!-- the classpath for building the 1.1 applet -->
     <path id="jalviewlite.deps">
       <fileset dir="${java118.home}">
-        <include name="lib/classes.zip" />
+        <include name="lib/rt.jar" />
       </fileset>
       <fileset dir="${java.home}/lib">
         <include name="plugin.jar" />