JAL-1201 more tweaks to page layout

diff --git a/examples/appletParameters.html b/examples/appletParameters.html
index 286c26d..78a5eb7 100644 (file)
--- a/examples/appletParameters.html
+++ b/examples/appletParameters.html
@@ -148,8 +148,8 @@ document.onclick = mclose;
 <li class="jvlite-nav-small"><a href="appletParameters.html">Applet Parameters</a></li>
 <li><a href="jalviewLiteJs.html">Javascript API</a></li>
 <li><a href="formComplete.html">in-page API demo</a></li>
-<li><a href="linkedApplets_ng.html">Two JalviewLites demo</a></li>
-<li><a href="embeddedWJmol.html">Sequence And Structure demo</a></li>
+<li><a href="linkedapplets_ng.html">Two JalviewLites demo</a></li>
+<li><a href="embeddedWJmol.html">Jalview and Jmol demo</a></li>
 </ul>
 </div>
 

diff --git a/examples/applets.html b/examples/applets.html
index 2ab29a3..b1d2f83 100755 (executable)
--- a/examples/applets.html
+++ b/examples/applets.html
@@ -147,8 +147,8 @@ document.onclick = mclose;
 <li><a href="appletParameters.html">Applet Parameters</a></li>
 <li><a href="jalviewLiteJs.html">Javascript API</a></li>
 <li><a href="formComplete.html">in-page API demo</a></li>
-<li><a href="linkedApplets_ng.html">Two JalviewLites demo</a></li>
-<li><a href="embeddedWJmol.html">Sequence And Structure demo</a></li>
+<li><a href="linkedapplets_ng.html">Two JalviewLites demo</a></li>
+<li><a href="embeddedWJmol.html">Jalview and Jmol demo</a></li>
 </ul>
 </div>
 
@@ -313,14 +313,6 @@ document.onclick = mclose;
             </tr>
           </table>
         </div>
-        <p>&nbsp;</p>
-          <p>For more JalviewLite examples, follow the links below.
-          <ul>
-          <li><a href="embedded.html">JalviewLite embedded in the web page</a></li>
-          <li><a href="formComplete.html">use Javascript to control and get data from JalviewLite</a></li>
-          <li><a href="linkedapplets_ng.html">use Javascript to make two jalviewLite instances talk to each other</a></li>
-          <li><a href="embeddedWJmol.html">configure JalviewLite to talk to a Jmol applet on the page.</a></li>
-          </ul>
 </div>
 
 <div id ="footer">

diff --git a/examples/embedded.html b/examples/embedded.html
index 1450a8b..0035715 100644 (file)
--- a/examples/embedded.html
+++ b/examples/embedded.html
@@ -148,8 +148,8 @@ document.onclick = mclose;
 <li><a href="jalviewLiteJs.html">Javascript API</a></li>
 <li><a href="formComplete.html">in-page API demo</a></li>
 <li class="jvlite-nav-small"><a href="embedded.html">Embedded applet demo</a></li>
-<li><a href="linkedApplets_ng.html">Two JalviewLites demo</a></li>
-<li><a href="embeddedWJmol.html">Sequence And Structure demo</a></li>
+<li><a href="linkedapplets_ng.html">Two JalviewLites demo</a></li>
+<li><a href="embeddedWJmol.html">Jalview and Jmol demo</a></li>
 </ul>
 </div>
 

diff --git a/examples/embeddedWJmol.html b/examples/embeddedWJmol.html
index e560f8c..e4bc439 100644 (file)
--- a/examples/embeddedWJmol.html
+++ b/examples/embeddedWJmol.html
@@ -237,8 +237,8 @@ document.onclick = mclose;
 <li><a href="appletParameters.html">Applet Parameters</a></li>
 <li><a href="jalviewLiteJs.html">Javascript API</a></li>
 <li><a href="formComplete.html">in-page API demo</a></li>
-<li><a href="linkedApplets_ng.html">Two JalviewLites demo</a></li>
-<li class="jvlite-nav-small"><a href="embeddedWJmol.html">Sequence And Structure demo</a></li>
+<li><a href="linkedapplets_ng.html">Two JalviewLites demo</a></li>
+<li class="jvlite-nav-small"><a href="embeddedWJmol.html">Jalview and Jmol demo</a></li>
 </ul>
 </div>
 

diff --git a/examples/formComplete.html b/examples/formComplete.html
index aebffc0..930f778 100644 (file)
--- a/examples/formComplete.html
+++ b/examples/formComplete.html
@@ -147,8 +147,8 @@ document.onclick = mclose;
 <li><a href="appletParameters.html">Applet Parameters</a></li>
 <li><a href="jalviewLiteJs.html">Javascript API</a></li>
 <li  class="jvlite-nav-small"><a href="formComplete.html">in-page API demo</a></li>
-<li><a href="linkedApplets_ng.html">Two JalviewLites demo</a></li>
-<li><a href="embeddedWJmol.html">Sequence And Structure demo</a></li>
+<li><a href="linkedapplets_ng.html">Two JalviewLites demo</a></li>
+<li><a href="embeddedWJmol.html">Jalview and Jmol demo</a></li>
 </ul>
 </div>
 

diff --git a/examples/jalviewLiteJs.html b/examples/jalviewLiteJs.html
index d0691b6..fe38449 100644 (file)
--- a/examples/jalviewLiteJs.html
+++ b/examples/jalviewLiteJs.html
@@ -148,21 +148,14 @@ document.onclick = mclose;
 <li><a href="appletParameters.html">Applet Parameters</a></li>
 <li class="jvlite-nav-small"><a href="jalviewLiteJs.html">Javascript API</a></li>
 <li><a href="formComplete.html">in-page API demo</a></li>
-<li><a href="linkedApplets_ng.html">Two JalviewLites demo</a></li>
-<li><a href="embeddedWJmol.html">Sequence And Structure demo</a></li>
+<li><a href="linkedapplets_ng.html">Two JalviewLites demo</a></li>
+<li><a href="embeddedWJmol.html">Jalview and Jmol demo</a></li>
 </ul>
 </div>
 
 <div id="content" class="content"> 
                <p>The jalviewLite applet's application programming interface (API) includes two components. A <a href="javascript/jalview.js">JalviewLite Javascript Library</a> and the <a href="#api">public methods on the JalviewLite applet</a>.
 </p>
-               <p>The best way to learn how to use the API is to see it in action on the demonstration pages below:</p>
-               <ul>
-          <li><a href="formComplete.html">use Javascript to control and get data from JalviewLite</a></li>
-          <li><a href="linkedapplets_ng.html">use Javascript to make two jalviewLite instances talk to each other.</a></li>
-          <li><a href="embeddedWJmol.html">configure JalviewLite to talk to a Jmol applet on the page (EXPERIMENTAL! please provide feedback!).</a></li>
-          <li><a href="javascriptLaunch.html">launch JalviewLite from a javascript button</a></li>
-               </ul>
                <h3>Notes</h3>
                <ul>
                <li>Unfortunately Javascript - Java communication is not possible

diff --git a/examples/javascriptLaunch.html b/examples/javascriptLaunch.html
index 5b6d489..0f6f4c5 100644 (file)
--- a/examples/javascriptLaunch.html
+++ b/examples/javascriptLaunch.html
@@ -148,7 +148,7 @@ document.onclick = mclose;
 <li><a href="jalviewLiteJs.html">Javascript API</a><ul><li class="jvlite-nav-small"><a href="javascriptLaunch.html">JalviewLite Button</a></li></ul></li>
 <li><a href="formComplete.html">in-page API demo</a></li>
 <li><a href="linkedApplets_ng.html">Two JalviewLites demo</a></li>
-<li><a href="embeddedWJmol.html">Sequence And Structure demo</a></li>
+<li><a href="embeddedWJmol.html">Jalview and Jmol demo</a></li>
 </ul>
 </div>
 

diff --git a/examples/linkedapplets_ng.html b/examples/linkedapplets_ng.html
index 80bda5e..1ea2718 100644 (file)
--- a/examples/linkedapplets_ng.html
+++ b/examples/linkedapplets_ng.html
@@ -167,7 +167,7 @@ document.onclick = mclose;
 <li><a href="jalviewLiteJs.html">Javascript API</a></li>
 <li><a href="formComplete.html">in-page API demo</a></li>
 <li class="jvlite-nav-small"><a href="linkedApplets_ng.html">Two JalviewLites demo</a></li>
-<li><a href="embeddedWJmol.html">Sequence And Structure demo</a></li>
+<li><a href="embeddedWJmol.html">Jalview and Jmol demo</a></li>
 </ul>
 </div>
 
@@ -175,13 +175,6 @@ document.onclick = mclose;
     <strong>JalviewLite Linked Applets Demo<br></strong>
     <p>The two applets below use <a href="JalviewLiteJs.html">JalviewLite's javascript API</a> to exchange events about the currently selected region and mouse position in the alignment.
     </p>
-    <p>See the other demonstration pages below to see the API in action:</p>
-    <ul>
-          <li><a href="formComplete.html">use Javascript to control and get data from JalviewLite</a></li>
-          <li><a href="embeddedWJmol.html">configure JalviewLite to talk to a Jmol applet on the page.</a></li>
-          <li><a href="javascriptLaunch.html">launch JalviewLite from a javascript button</a></li>
-          
-    </ul>
        <script> 
   var attributes = {
     code : 'jalview.bin.JalviewLite',