Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git] / .classpath
2019-11-05 soaresRevert "JAL-3210 default eclipse .project .classpath...
2019-11-05 soaresJAL-3210 default eclipse .project .classpath and .setti...
2019-10-08 Ben SoaresJAL-3210 removed eclipse project, classpath and core...
2019-10-08 gmungocMerge branch 'develop' into Jalview-JS/develop
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge
2019-04-26 Ben SoaresRemoving .classpath from this branch
2019-04-25 Ben SoaresJAL-3224 JAL-3225 To be compatible with install4j bundl...
2019-04-25 Ben SoaresJAL-3224 JAL-3225 Added lines to check for updates...
2019-04-24 Jim ProcterMerge branch 'task/JAL-3225_Integration_Gradle_building...
2019-04-23 Jim ProcterJAL-1929 JAL-3224 getdown artefacts staged as getdown...
2019-04-11 Jim ProcterMerge branch 'develop' into task/JAL-3130_Java_11_inves...
2019-04-11 Jim ProcterJAL-3130 clean up eclipse class path for dependencies...
2019-03-29 gmungocMerge branch 'develop' into Jalview-JS/develop
2019-03-29 gmungocJAL-3140 intervalstore now v1.0 (public release)
2019-03-13 gmungocMerge branch 'develop' into trialMerge
2019-03-07 gmungocJAL-3035 removed spring libraries as only used for...
2019-03-01 gmungocMerge branch 'feature/intervalStoreJ' into merge/JAL...
2019-03-01 gmungocJAL-3140 reduced coupling to intervalstore.jar feature/intervalStoreJ
2019-02-07 gmungocJAL-3140 updated to latest intervalstore.jar
2019-01-29 hansonrclasspath to include test always
2018-12-03 gmungocJAL-3063 Castor removed from codebase
2018-11-29 gmungocJAL-3140 updated IntervalStore jar
2018-11-29 gmungocJAL-3140 named tagged version of intervalstore.jar
2018-11-29 gmungocJAL-3140 NCList now via IntervalStore library
2018-10-17 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into Jalview-BH...
2018-09-11 Jim ProcterJAL-3112 Use classgraph to reconstruct the classpath...
2018-09-11 Jim ProcterJAL-3111 drop hts-1.33 as a dependency (in favour of...
2018-09-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_Branch
2018-09-07 Jim ProcterJAL-2988 JAL-2968 renamed patched VAqua5 to VAqua5...
2018-08-22 Jim ProcterJAL-2988 JAL-2976 update to latest VAqua release: VAqua5
2018-08-16 hansonrJava2Script 3.2.2_04 fixes Clazz._exceptionOf P$ issue
2018-07-23 gmungocJAL-3049 corrected code and unit tests
2018-07-22 hansonrJAL-3026 upgrades Jmol to 14.29.17 for Java.
2018-07-20 hansonrJAL-3032 adds Java 8 functionality (2/2)
2018-07-05 hansonrremoving temp files for build of libjs
2018-07-03 hansonrsrc2 directory added to class path, zipping/unzipping...
2018-06-27 hansonrJAL-3032 just the changes pulled already
2018-06-26 Jim ProcterJAL-3035 - jalview-das is no more !
2018-05-07 gmungocMerge branch 'releases/Release_2_10_4_Branch' into...
2018-05-02 Jim ProcterJAL-2976 Vaqua(4) as a dependency
2018-03-21 Jim ProcterJAL-2754 remove duplicate classpath entry again
2018-03-21 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into...
2018-03-21 gmungocJAL-2754 update to Java 1.8
2017-11-15 gmungocJAL-2835 spike updated with latest
2017-11-13 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-11-13 Jim ProcterJAL-2702 update to groovy 2.4.12
2017-10-20 gmungocPush 1793 latest to spike branch
2017-10-06 gmungocJAL-2753 update to htsjdk 2.12.0 (requires Java 8)
2017-10-06 gmungocJAL-2754 update to Java 1.8
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-05-23 Jim ProcterJAL-2549 replace JABAWS 2.1 with 2.2 client and remove...
2016-10-27 tcofoegbuJAL-2177 Jmol update from: Jmol-14.2.14_2015.06.11...
2016-05-04 gmungocJAL-2074 reinstated xerces-impl.jar
2016-05-04 Jim ProcterRevert "JAL-2074 removed xerces to explore wierdness"
2016-05-04 gmungocJAL-2074 corrected classpathentry for Groovy 2.4.6
2016-04-26 tcofoegbuJAL-2071 House keeping
2016-04-26 tcofoegbuJAL-2074 removed hard-coded groovy lib path in classpath
2016-04-25 Jim ProcterJAL-2074 removed xerces to explore wierdness
2016-04-25 Jim ProcterJAL-2074 reinstate upgrade to groovy 2.8.4-indy
2016-04-25 Jim ProcterJAL-2074 switch to non-indy groovy to see if class...
2016-04-20 Jim ProcterJAL-2074 updated groovy-all to 2.4.6-indy
2015-12-22 gmungocJAL-1191 SequenceOntology wrapping/caching SO.OBO via...
2015-10-15 Jim ProcterMerge branch 'develop' into features/JAL-653_JAL-1766_h...
2015-06-26 gmungocMerge branch 'develop' into features/JAL-892varnaToProject
2015-06-26 gmungocMerge branch 'develop' into features/JAL-1759jmolUpdate
2015-06-26 gmungocJAL-1759 updates for Jmol 14.2.14_25.06.11
2015-06-23 Jim ProcterMerge branch 'merge/develop_JAL-1780_JAL-653_JAL-1892...
2015-06-22 gmungocJAL-893 upgrade to VARNAv3-93.jar
2015-06-19 tcofoegbuJAL-1270 JUnit to TestNG refactoring
2015-06-12 Jim ProcterJAL-1766 update HTSJDK to Version 1.133
2015-06-08 Jim ProcterJAL-1766 added a snapshot build of the htsjdk
2015-06-02 tcofoegbuJAL-1641 applet build fix
2015-05-27 tcofoegbuRemoved redundant classes and dependencies pulled in...
2015-05-21 tcofoegbuJAL-1740 implemented auto-update of BioJsMSA, introduce... features/JAL-1740_BioJsAutoUpdater
2015-05-05 gmungocJAL-1725 jetty libraries added to classpath
2015-03-27 tcofoegbumerge commit
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-02-26 Charles OfoegbuJAL-1667 PDBe Search Interface implementation
2015-02-06 Jim ProcterMerge branch 'bug/JAL-1643_File-chooser-improvement...
2015-02-05 Charles Ofoegbumerge commit
2015-02-05 Jim ProcterJAL-1643 correct version of quaqua (8) plus THIRDPARTYL...
2015-02-05 Jim ProcterJAL-1643 renamed quaqua library to add version number
2015-02-04 Charles OfoegbuJAL-1643 Modified JalviewFileChooser to have a more...
2015-01-07 Jim ProcterMerge branch 'develop' into JAL-1483_29dev
2014-12-28 gmungocMerge branch 'features/JAL-1596ChimeraREST' into develop
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7
2014-12-08 Charles OfoegbuAdded annotation export configuration for Html export...
2014-11-26 Charles Ofoegbuadded jfreesvg.jar to classpath
2014-11-26 Charles OfoegbuMerge branch 'develop' of https://source.jalview.org...
2014-11-25 Jim ProcterMerge branch 'bug/JAL-689' into develop
2014-11-25 Jim Procterback out duplicate jfree classpath entry
2014-11-25 Charles Ofoegbuclasspath conflict resolution
2014-11-25 Charles Ofoegbumerge commit
2014-11-25 Charles Ofoegbumerge commit features/JAL-1469_svg-output-for-figure-export
2014-11-18 Charles Ofoegbuupdated classpath
2014-11-18 Charles Ofoegbumodified classpath
2014-11-17 Charles Ofoegbucomand line support for svg generation
2014-11-13 Jim ProcterMerge branch 'features/JAL-1469_svg-output-for-figure...
2014-11-13 Jim ProcterJAL-1469 added jfreesvg to desktop dependencies
2014-11-13 Charles Ofoegbuadded jfreesvg dependency to class path
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