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JAL-3181 refactor: extracted buildLinkMenu() for testability
[jalview.git] / lib /
2018-09-11 Jim ProcterJAL-3111 drop hts-1.33 as a dependency (in favour of... tree | commitdiff
2018-09-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_Branch tree | commitdiff
2018-09-07 Jim ProcterJAL-2988 JAL-2968 renamed patched VAqua5 to VAqua5... tree | commitdiff
2018-09-07 Jim ProcterJAL-3105 fix for focus transfer after window closed... tree | commitdiff
2018-08-22 Jim ProcterJAL-2988 JAL-2976 update to latest VAqua release: VAqua5 tree | commitdiff
2018-06-26 Jim ProcterJAL-3035 - jalview-das is no more ! tree | commitdiff
2018-05-07 gmungocMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-05-02 Jim ProcterJAL-2976 Vaqua(4) as a dependency tree | commitdiff
2017-11-15 gmungocJAL-2835 spike updated with latest tree | commitdiff
2017-11-13 gmungocMerge branch 'develop' into features/JAL-1793VCF tree | commitdiff
2017-11-13 Jim ProcterJAL-2702 update to groovy 2.4.12 tree | commitdiff
2017-10-20 gmungocPush 1793 latest to spike branch tree | commitdiff
2017-10-06 gmungocJAL-2753 add new jar to lib folder! tree | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo tree | commitdiff
2017-09-04 Jim ProcterJAL-2549 update JABAWS 2.2 library to client that repor... tree | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch tree | commitdiff
2017-05-23 Jim ProcterJAL-2549 replace JABAWS 2.1 with 2.2 client and remove... tree | commitdiff
2016-11-16 Jim ProcterJAL-2177 remove signature from desktop library Jmol jar tree | commitdiff
2016-10-27 tcofoegbuJAL-2177 Jmol update from: Jmol-14.2.14_2015.06.11... tree | commitdiff
2016-06-02 Jim ProcterJAL-2125 remove SHA256 digest manifest and signatures... tree | commitdiff
2016-06-02 Jim ProcterJAL-2125 remove SHA256 digest manifest and signatures... tree | commitdiff
2016-05-04 gmungocJAL-2074 reinstated xerces-impl.jar tree | commitdiff
2016-05-04 Jim ProcterRevert "JAL-2074 removed xerces to explore wierdness" tree | commitdiff
2016-04-26 Jim ProcterMerge branch 'develop' into groovy/JAL-2074_upgradeto2.4.4 groovy/JAL-2074_upgradeto2.4.4 tree | commitdiff
2016-04-26 Jim ProcterJAL-2080 removed all 'Class-Path' references in libs tree | commitdiff
2016-04-26 Jim ProcterJAL-2080 removed classpath references to Xerces and... tree | commitdiff
2016-04-25 Jim ProcterJAL-2074 removed xerces to explore wierdness tree | commitdiff
2016-04-25 Jim ProcterJAL-2074 reinstate upgrade to groovy 2.8.4-indy tree | commitdiff
2016-04-25 Jim ProcterJAL-2074 reinstate upgrade to groovy 2.8.4-indy tree | commitdiff
2016-04-25 Jim ProcterJAL-2074 add the groovy 1.8.2 library back to classpath tree | commitdiff
2016-04-25 Jim ProcterJAL-2074 backed out groovy upgrade - back to 1.8.2 tree | commitdiff
2016-04-25 Jim ProcterJAL-2074 groovy-all didn’t get added :q tree | commitdiff
2016-04-25 Jim ProcterJAL-2074 switch to non-indy groovy to see if class... tree | commitdiff
2016-04-20 Jim ProcterJAL-2074 updated groovy-all to 2.4.6-indy tree | commitdiff
2015-12-22 gmungocJAL-1191 SequenceOntology wrapping/caching SO.OBO via... tree | commitdiff
2015-10-15 Jim ProcterMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2015-06-26 gmungocJAL-1759 updates for Jmol 14.2.14_25.06.11 tree | commitdiff
2015-06-22 gmungocJAL-893 upgrade to VARNAv3-93.jar tree | commitdiff
2015-06-12 Jim ProcterJAL-1766 update HTSJDK to Version 1.133 tree | commitdiff
2015-06-08 Jim ProcterJAL-1766 added a snapshot build of the htsjdk tree | commitdiff
2015-06-02 tcofoegbuJAL-1641 applet build fix tree | commitdiff
2015-05-27 tcofoegbuRemoved redundant classes and dependencies pulled in... tree | commitdiff
2015-05-21 tcofoegbuJAL-1740 implemented auto-update of BioJsMSA, introduce... features/JAL-1740_BioJsAutoUpdater tree | commitdiff
2015-05-05 gmungocJAL-1725 first version of Jetty server / chimera select... tree | commitdiff
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch tree | commitdiff
2015-02-26 Charles OfoegbuJAL-1667 PDBe Search Interface implementation tree | commitdiff
2015-02-06 Jim ProcterMerge branch 'bug/JAL-1643_File-chooser-improvement... tree | commitdiff
2015-02-05 Charles Ofoegbumerge commit tree | commitdiff
2015-02-05 Jim ProcterJAL-1643 jarred up the quaqua native libraries and... tree | commitdiff
2015-02-05 Jim ProcterJAL-1643 correct version of quaqua (8) plus THIRDPARTYL... tree | commitdiff
2015-02-05 Jim ProcterJAL-1643 renamed quaqua library to add version number tree | commitdiff
2015-02-04 Charles OfoegbuJAL-1643 Modified JalviewFileChooser to have a more... tree | commitdiff
2014-11-13 Jim ProcterMerge branch 'features/JAL-1469_svg-output-for-figure... tree | commitdiff
2014-11-12 Charles OfoegbuAdded support for SVG Export tree | commitdiff
2014-10-31 Charles OfoegbuJAL-1541 upadated BioJs emmitter to store alignment... tree | commitdiff
2014-10-23 Jim ProcterMerge branch 'hotfix/JAL-1521' into Release_2_8_2_Branch tree | commitdiff
2014-10-23 Jim ProcterMerge branch 'hotfix/JAL-1521' into develop tree | commitdiff
2014-10-23 unknownJAL-1521 updated xerces to 2.11 along with xml-apis tree | commitdiff
2014-10-23 Jim ProcterJAL-1521 patch is to remove xerces from classpath.... tree | commitdiff
2014-10-21 Jim ProcterJAL-1216 update to VARNA 3.91 tree | commitdiff
2014-07-22 j.procter@dundee... JAL-1333 add log4j-slf4j bridge tree | commitdiff
2014-07-04 j.procter@dundee... JAL-1333 more abstraction and refactoring and working... tree | commitdiff
2013-11-25 Jim ProcterMerge branch 'JAL-1139_proguard' into develop tree | commitdiff
2013-11-25 Jim ProcterMerge branch 'JAL-1139_proguard' into Release_2_8_1_Branch tree | commitdiff
2013-11-25 Jim ProcterJAL-1139 specified SHA1WithRSA for sig algorithm and... tree | commitdiff
2013-10-15 Jim ProcterJAL-1159 Merging 2.8.1 patches and Anne Menards work... tree | commitdiff
2013-10-14 Jim ProcterMerge branch 'develop' into dev_from_2_8_1 tree | commitdiff
2013-10-08 Jim Procterreindexed Jmol jar with 'jar -i' to fix JAL-1389 tree | commitdiff
2013-10-04 Jim ProcterJAL-1378 JWS-71 update to from-source build of JABA... tree | commitdiff
2013-09-02 Jim ProcterJAL-1358 remove old v2 jaba min-client tree | commitdiff
2013-08-31 Daniel BartonBrief html documentation entry for RNAalifold under... tree | commitdiff
2013-08-30 Daniel BartonJAL-1358 Cleaned up RNAalifoldClient.java. RNA helices... tree | commitdiff
2013-08-28 Daniel BartonRNAalifoldClient updated to be more like AAConClient... tree | commitdiff
2013-08-27 Daniel BartonJAL-1358 jalview displays some RNA struture annotation... tree | commitdiff
2013-02-13 jprocterJAL-1216 switch to official release of VARNA 3.9 tree | commitdiff
2013-02-11 jprocterjson simple library tree | commitdiff
2012-12-04 jprocterJAL-1216 switch to official release of VARNA 3.9 tree | commitdiff
2012-07-16 Anne MenardMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2012-07-10 Anne Menardv2 tree | commitdiff
2012-07-05 Anne MenardAdd support RNAML format tree | commitdiff
2012-06-26 jprocterJAL-899 added groovy support to develop branch tree | commitdiff
2012-03-30 jprocterMerge branch 'JAL-972-dasobert-to-jdas' into JAL-972... tree | commitdiff
2012-03-30 jprocter(JAL-972) jdas latest build tree | commitdiff
2012-03-01 jprocter(JAL-893) update to VARNAv3.9-dev version tree | commitdiff
2012-03-01 jprocterrevised version of Jdas with simpler connectionProperty... tree | commitdiff
2012-02-29 jprocterupdate to latest build tree | commitdiff
2012-02-29 jprocterjdas runtime dependencies tree | commitdiff
2012-02-29 jprocterupdated build of jdas tree | commitdiff
2012-02-13 jprocter(JAL-972) updated jdas to latest version includign... tree | commitdiff
2012-02-13 jprocterremoved all dasobert code and begun to replace with... tree | commitdiff
2012-01-17 jprocterMerge branch 'JAL-1040_jar_manifest_fix' into develop tree | commitdiff
2012-01-11 jprocterremoved empty lines and fields in manifest like: tree | commitdiff
2011-11-04 jprocterMerge branch 'JAL-980_jmol_patch' into develop tree | commitdiff
2011-11-04 jprocter(JAL-980) use proper release number for Jmol libs ... tree | commitdiff
2011-11-04 jprocter(JAL-980,JAL-982) - applet console only allows console... tree | commitdiff
2011-11-04 jprocter(JAL-980) update Jmol library to 12.2.16452 (built... tree | commitdiff
2011-11-03 jprocter(JAL-976) upgrade to jabaws-2.0 min-client library tree | commitdiff
2011-10-04 jprocterMerge remote-tracking branch 'remotes/origin/2_5_1_rna_... tree | commitdiff
2011-10-03 jproctercompile swingreader component for java 1.5 (JAL-948) tree | commitdiff
2011-09-26 jproctertidying classpath and fixing InstallAnywhere build tree | commitdiff
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