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Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git] / src / jalview / analysis / scoremodels / ScoreMatrix.java
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use... commit | commitdiff
2019-03-03 gmungocJAL-3205 faster calculation with symmetric score matrix commit | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo commit | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting commit | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch commit | commitdiff
2017-05-16 gmungocJAL-2403 simplify instantiation / configuration of... commit | commitdiff
2017-05-02 gmungocJAL-2499 JAL-2403 push 'configure for view' inside... commit | commitdiff
2017-04-11 gmungocJAL-2403 improved ScoreModelI hierarchy as per Kira... commit | commitdiff
2017-03-29 gmungocJAL-2416 revert to '*' not '-' in score matrix, handle... commit | commitdiff
2017-03-29 gmungocJAL-2416 explicit constant for unknown/unknown identity... commit | commitdiff
2017-03-28 gmungocJAL-2403 JAL-2416 pairwise score unexpected symbols... commit | commitdiff
2017-03-28 gmungocJAL-2403 further test coverage for ScoreMatrix, min... commit | commitdiff
2017-03-27 gmungocJAL-2416 parse score matrices in either NCBI or AAindex... commit | commitdiff
2017-03-27 gmungocJAL-2416 tidy up after switch from ' ' to '-' in score... commit | commitdiff
2017-03-27 gmungocJAL-2416 score matrix gap symbol (if any) dynamically... commit | commitdiff
2017-03-27 gmungocJAL-2416 add score model description field for tooltip... commit | commitdiff
2017-03-27 gmungocJAL-2416 use '-' not space for gap in score matrices commit | commitdiff
2017-03-23 gmungocJAL-2393 code tidy and comments, PIDDistanceModel depre... commit | commitdiff
2017-02-28 gmungocJAL-1632 'includeGaps' applied to FeatureDistanceModel... commit | commitdiff
2017-02-27 gmungocJAL-838 ScoreMatrix now respects SimilarityParams! commit | commitdiff
2017-02-24 gmungocJAL-838 added 'SeqSpace' PID mode, added parameters... commit | commitdiff
2017-02-24 gmungocJAL-2403 remove unused ScoreMatrix.symmetric commit | commitdiff
2017-02-23 gmungocJAL-2403 JAL-1483 changes to ScoreModelI hierarchy... commit | commitdiff
2017-02-21 gmungocJAL-2416 ScoreMatrix.getMatrix() returns a defensive... commit | commitdiff
2017-02-21 gmungocJAL-2416 support roundtrip print/parse of ScoreMatrix commit | commitdiff
2017-02-21 gmungocMerge branch 'develop' into features/JAL-2393customMatrices commit | commitdiff
2017-02-21 gmungocJAL-2416 more validation in ScoreMatrix constructor commit | commitdiff
2017-02-20 gmungocJAL-2403 ScoreModelI now DistanceModelI, ScoreMatrix... commit | commitdiff
2017-02-17 gmungocJAL-2403 redundant 'implements' removed commit | commitdiff
2017-02-14 gmungocParsing moved to (new) ScoreMatrixFile, drag and drop... commit | commitdiff
2017-02-13 gmungocJAL-2416 allow alphabet symbol (optional) in first... commit | commitdiff
2017-02-13 gmungocJAL-1632 JAL-2416 load score matrices from file, as... commit | commitdiff
2017-02-13 gmungocJAL-1632 first cut of Tree chooser dialog and ScoreMode... commit | commitdiff