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[jalview.git] / src / jalview / bin / Commands.java

2023-04-14	Ben Soares	JAL-629 Adding PAE and TFType at structure loading...	blob \| commitdiff
2023-04-12	Ben Soares	JAL-629 parse SubVals once with ArgValue. Ensure SubVal...	blob \| commitdiff \| diff to current
2023-04-05	Ben Soares	JAL-629 Tests for FileUtils. Tidying counter substituti...	blob \| commitdiff \| diff to current
2023-04-04	Ben Soares	JAL-629 More consistent printing of --arguments. Exampl...	blob \| commitdiff \| diff to current
2023-03-29	Ben Soares	JAL-629 Added --opennew --nonews --nosplash. Added...	blob \| commitdiff \| diff to current
2023-03-28	Ben Soares	JAL-629 Opening files in new windows. not working yet	blob \| commitdiff \| diff to current
2023-03-25	Ben Soares	JAL-629 improvements to argparser toString. Improvement...	blob \| commitdiff \| diff to current
2023-03-23	Ben Soares	JAL-629 refactor ArgParser and helper classes all to...	blob \| commitdiff \| diff to current
2023-03-17	Ben Soares	JAL-629 All applications System.exits going through...	blob \| commitdiff \| diff to current
2023-03-15	Ben Soares	JAL-629 Commands more objecty, less classy. FileLoader...	blob \| commitdiff \| diff to current
2023-03-08	Ben Soares	JAL-629 --close individually for each AlignFrame opened...	blob \| commitdiff \| diff to current
2023-03-08	Ben Soares	JAL-629 Fix --headless for new args. Fix progressbar...	blob \| commitdiff \| diff to current
2023-03-03	Ben Soares	JAL-629 Improved consistency of ArgParser classes ...	blob \| commitdiff \| diff to current
2023-03-02	Ben Soares	JAL-629 Some refactoring to allow more flexible use...	blob \| commitdiff \| diff to current
2023-02-28	Ben Soares	JAL-629 Firm up bootstrapArgs. Correct '-colour' in...	blob \| commitdiff \| diff to current
2023-02-27	Ben Soares	JAL-629 Fix Exceptions when running with CLI not headless	blob \| commitdiff \| diff to current
2023-02-27	Ben Soares	JAL-629 removed debug prints. added .cif. added some...	blob \| commitdiff \| diff to current
2023-02-24	Ben Soares	JAL-629 Made ArgValuesMap helper class, simplifies...	blob \| commitdiff \| diff to current
2023-02-23	Ben Soares	JAL-629 bootstrap args and properties. Remember index...	blob \| commitdiff \| diff to current
2023-02-03	Ben Soares	JAL-629 Fasta sequence id reading whitespace fix. Flexi...	blob \| commitdiff \| diff to current
2023-01-26	Ben Soares	JAL-629 adjust arg type for tempfac-shading -- was...	blob \| commitdiff \| diff to current
2023-01-24	James Procter	JAL-629 hacked in --tempfac-shading - hardcoded to...	blob \| commitdiff \| diff to current
2023-01-24	James Procter	JAL-629 suggest not breaking out of the structure proce...	blob \| commitdiff \| diff to current
2023-01-24	James Procter	JAL-629 don’t carry on Jalview.main if we’ve already...	blob \| commitdiff \| diff to current
2023-01-24	James Procter	JAL-629 don’t trash user’s system property file when...	blob \| commitdiff \| diff to current
2023-01-24	James Procter	JAL-629 labelled breaks are frowned upon by everyone	blob \| commitdiff \| diff to current
2023-01-23	Ben Soares	JAL-629 Attempts to add PAE to structure. --headless...	blob \| commitdiff \| diff to current
2023-01-18	Ben Soares	JAL-629 make sequence id key 'seqid'	blob \| commitdiff \| diff to current
2023-01-11	Ben Soares	JAL-629 refactoring TFType. Remove i18n identification...	blob \| commitdiff \| diff to current
2022-12-19	Ben Soares	JAL-629 Add image output and quit	blob \| commitdiff \| diff to current
2022-12-15	Ben Soares	JAL-629 move SubId to more logical place. Attempt remov...	blob \| commitdiff \| diff to current
2022-12-14	Ben Soares	JAL-629 Open Structure Viewer from cmdline	blob \| commitdiff \| diff to current
2022-12-09	Ben Soares	JAL-629 null check, fixed tests!	blob \| commitdiff \| diff to current
2022-12-08	Ben Soares	JAL-629 stray code deleted	blob \| commitdiff \| diff to current
2022-12-08	Ben Soares	JAL-629 Allow attachment of pAE file to a particular...	blob \| commitdiff \| diff to current
2022-12-05	Ben Soares	JAL-629 implementation of --tempfac options	blob \| commitdiff \| diff to current
2022-11-23	Ben Soares	JAL-629 Doing things with the command line arguments	blob \| commitdiff \| diff to current

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