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Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git] / src / jalview / bin / argparser / ArgParser.java
2023-10-11 Ben SoaresJAL-629 Remove argfiles from the hashset of used argfil... commit | commitdiff
2023-09-19 Ben SoaresJAL-629 Allow multiple structure images for multiple... commit | commitdiff
2023-09-16 Ben SoaresJAL-4269 Now using --width, --height, --scale for both... commit | commitdiff
2023-09-08 Ben SoaresJAL-4262 Make an excepetion for STDOUT filename in... improvement/JAL-4262_deprecation_warning_when_old_CLI_arguments_are_processed commit | commitdiff
2023-09-08 Ben SoaresMerge branch 'bug/JAL-4277_dirname_substitution_always_... commit | commitdiff
2023-09-08 Ben SoaresJAL-4262 Dialog for GUI and WARN for CLI of old style... commit | commitdiff
2023-09-07 Ben SoaresJAL-4277 Corrected choice of all or last opened linkedI... commit | commitdiff
2023-09-07 Ben SoaresJAL-629 Change names of Opt.ALLOWALL to Opt.ALLOWMULTII... improvement/JAL-629_Apply_alignment_options_to_all_globbed_files commit | commitdiff
2023-08-11 Ben SoaresJAL-629 Much better way of dealing with list of filenam... commit | commitdiff
2023-08-09 Ben SoaresJAL-629 Move more stdout messages to stderr when output... commit | commitdiff
2023-06-07 James ProcterMerge branch 'patch/JAL-4195_cli_eps_export_npe' into... commit | commitdiff
2023-06-06 James ProcterJAL-1551 formatting and javadoc for ArgParser rather... commit | commitdiff
2023-06-01 Ben SoaresJAL-4193 JAL-4194 sessionProperties layer in Cache... commit | commitdiff
2023-05-27 Ben SoaresJAL-4121 Store Arg.Opts in bootstrapArgs. Change Opt... commit | commitdiff
2023-05-23 Ben SoaresJAL-629 Added --structureimage code and formatting... commit | commitdiff
2023-05-18 Ben SoaresJAL-629 fixes to typed args commit | commitdiff
2023-05-18 Ben SoaresJAL-629 Added 'Type' to args and argvalues commit | commitdiff
2023-05-16 Ben SoaresJAL-629 Ensure precedence of named linked ID values... commit | commitdiff
2023-05-14 Ben SoaresJAL-629 add an {extension} substitution commit | commitdiff
2023-05-12 Ben SoaresJAL-629 Added --opened arg which is like limiting ... commit | commitdiff
2023-05-11 Ben SoaresJAL-629 Add some shortnames to args. Add Opt.OUTPUT... commit | commitdiff
2023-05-11 Ben SoaresJAL-629 Fix --tempfac. Hide non-working --notempfac... commit | commitdiff
2023-05-11 Ben SoaresJAL-629 Added linkedId to ArgValuesMap for reference... commit | commitdiff
2023-05-10 Ben SoaresJAL-629 Check Arg options for obtaining boolean or... commit | commitdiff
2023-05-10 Ben SoaresJAL-629 More docs. Usage statement. Adjust some logging... commit | commitdiff
2023-05-04 Ben SoaresJAL-629 More NG arguments: --features, --annotations... commit | commitdiff
2023-05-02 Ben SoaresJAL-629 Changed --newframe and --allframes to --new... commit | commitdiff
2023-05-02 Ben SoaresJAL-629 Add --renderer arg/subval for vector output... commit | commitdiff
2023-04-30 Ben SoaresJAL-629 Change behaviour of --open GLOB to increment... commit | commitdiff
2023-04-29 Ben SoaresJAL-629 Added --all arg, [*] linkedId and functionality... commit | commitdiff
2023-04-27 Ben SoaresJAL-629 Changed --increment to --newframe to make sense... commit | commitdiff
2023-04-27 Ben SoaresJAL-629 allow opening URL as only argument(s) commit | commitdiff
2023-04-24 Ben SoaresJAL-629 Add --nowebdiscovery. Distinguish arg=="open... commit | commitdiff
2023-04-23 Ben SoaresJAL-629 Change --open to --append and --opennew to... commit | commitdiff
2023-04-22 Ben SoaresJAL-629 Test and fix --annotation --ssannotation args... commit | commitdiff
2023-04-14 Ben SoaresJAL-629 Adding PAE and TFType at structure loading... commit | commitdiff
2023-04-12 Ben SoaresJAL-629 allow comments in argfiles '#' commit | commitdiff
2023-04-05 Ben SoaresJAL-629 Tests for FileUtils. Tidying counter substituti... commit | commitdiff
2023-04-04 Ben SoaresJAL-629 More consistent printing of --arguments. Exampl... commit | commitdiff
2023-04-04 Ben SoaresJAL-629 --initsubstitutions as a bootstrap arg, new... commit | commitdiff
2023-04-03 Ben SoaresJAL-629 added setprop. More filename based substitution... commit | commitdiff
2023-03-30 Ben SoaresJAL-629 fix bug for opening single named file with... commit | commitdiff
2023-03-30 Ben SoaresJAL-629 Don't use new ArgParser if there are no --args... commit | commitdiff
2023-03-30 Ben SoaresJAL-629 fix SubVals npe commit | commitdiff
2023-03-29 Ben SoaresJAL-629 Added --opennew --nonews --nosplash. Added... commit | commitdiff
2023-03-28 Ben SoaresJAL-629 Opening files in new windows. not working yet commit | commitdiff
2023-03-25 Ben SoaresJAL-629 open initial non-Arg arguments as files in... commit | commitdiff
2023-03-23 Ben SoaresJAL-629 refactor ArgParser and helper classes all to... commit | commitdiff