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Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git] / src / jalview / ext / jmol / JalviewJmolBinding.java
2023-11-03 James ProcterJAL-4090 JAL-1551 spotlessApply commit | commitdiff
2023-11-02 James ProcterMerge branch 'develop' into patch/JAL-3921_jmol_session... commit | commitdiff
2023-10-20 James ProcterJAL-4307 also report molecule name in tooltip for show... feature/JAL-4307_hetatm_showhide commit | commitdiff
2023-10-20 James ProcterJAL-4307 some models return null for hetatm list commit | commitdiff
2023-10-19 James ProcterJAL-4307 View->Ligands submenu, implementation for... commit | commitdiff
2023-10-13 James ProcterJAL-4295 concatenate all mouseover highlights into... commit | commitdiff
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use... commit | commitdiff
2023-03-17 Jim ProcterJAL-3921 allow Jmol saveState to be executed as evalScr... patch/JAL-3921_jmol_session_save commit | commitdiff
2022-10-28 Jim ProcterJAL-4086 commented out attempt to create measurement... commit | commitdiff
2022-10-27 Ben SoaresJAL-4083 don't need globalUseScriptWait after all,... bug/JAL-4083_exceptions_for_multiple_residue_highlights_in_jmol commit | commitdiff
2022-10-27 Ben SoaresJAL-4083 only set globalUseScriptWait if needed commit | commitdiff
2022-10-27 Ben SoaresJAL-4083 Use jmolViewer.scriptWait instead of jmolViewe... commit | commitdiff
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache... commit | commitdiff
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework... commit | commitdiff
2021-09-15 Ben SoaresJAL-3818 formatting commit | commitdiff
2021-09-15 gmungocJAL-3818 process Jmol callbacks in AWT thread commit | commitdiff
2021-09-02 gmungocJAL-1842 remove redundant call to FeatureRenderer.featu... commit | commitdiff
2021-09-02 gmungocJAL-3509 better placement of call to notifyFeaturesChan... commit | commitdiff
2021-09-02 gmungocJAL-3509 coerce RESNUM to hidden (really) after fetchin... commit | commitdiff
2021-02-11 gmungocJAL-3818 process Jmol callbacks in AWT thread bug/JAL-3818_jmolDeadlock commit | commitdiff
2020-05-29 gmungocJAL-3551 null pointer defence while structure files... feature/JAL-3551Pymol commit | commitdiff
2020-05-26 gmungocJAL-1761 pattern for structure viewer construction... commit | commitdiff
2020-05-21 gmungocJAL-3551 copy Jalview features to Pymol 'p' (with pull... commit | commitdiff
2020-05-20 gmungocJAL-3626 use Viewer.scriptWait() to send Jmol commands... commit | commitdiff
2020-05-19 gmungocMerge branch 'develop' into feature/JAL-3551Pymol commit | commitdiff
2020-05-15 gmungocJAL-3551 pull up Close Viewer dialog to base class commit | commitdiff
2020-05-12 gmungocJAL-3518 tidy method, remove obsolete comment commit | commitdiff
2020-05-12 gmungocJAL-3518 failsafe check for null Jmol filename while... commit | commitdiff
2020-04-30 gmungocJAL-3551 save structure viewer session refactorings... commit | commitdiff
2020-03-16 gmungocJAL-3551 tidying, improved commands, fix Jmol model... commit | commitdiff
2020-03-13 gmungocJAL-3551 working proof of concept of Jalview driving... commit | commitdiff
2020-03-03 gmungocJAL-3158 superseded superposeStructures methods removed commit | commitdiff
2020-03-03 gmungocJAL-3518 more pull up / test coverage of structure... commit | commitdiff
2020-02-28 gmungocJAL-3518 basic refactoring / pull up of superposeStruct... commit | commitdiff
2020-02-21 gmungocJAL-2422 tidy of methods and parameters commit | commitdiff
2020-02-21 gmungocJAL-2422 general pull-up/removal of common or unused... commit | commitdiff
2020-02-20 gmungocJAL-2422 pull-up refactoring of structure commands... commit | commitdiff
2020-02-06 gmungocJAL-1842 remove redundant call to FeatureRenderer.featu... commit | commitdiff
2020-02-06 gmungocJAL-3509 better placement of call to notifyFeaturesChan... commit | commitdiff
2020-02-06 gmungocJAL-3509 coerce RESNUM to hidden (really) after fetchin... commit | commitdiff
2020-02-04 gmungocJAL-2422 pull up refactoring in preparation for Chimera... commit | commitdiff
2019-10-08 gmungocMerge branch 'develop' into Jalview-JS/develop commit | commitdiff
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge commit | commitdiff
2019-07-05 gmungocJAL-3187 initial refactoring towards peptide variant... commit | commitdiff
2019-06-06 gmungocMerge branch 'develop' into trialMerge commit | commitdiff
2019-05-06 gmungocJAL-3244 delete obsolete method commit | commitdiff
2019-04-16 hansonrlocalizes Thread colourby so that it does not cause... commit | commitdiff
2019-03-20 Ben SoaresJAL-3130 Lots of deprecation fixes. See utils/deprecat... commit | commitdiff
2019-02-19 gmungocJAL-3187 hacks to get peptide variant in to Jmol hover... commit | commitdiff
2018-12-25 hansonrbetter Jmol help link commit | commitdiff
2018-12-06 gmungocMerge branch 'develop' into Jalview-BH/JAL-3026-JAL... commit | commitdiff
2018-12-06 gmungocJAL-1854 fix Checkstyle import violations commit | commitdiff
2018-08-27 hansonrJAL-3026 Jmol functioning; some issues commit | commitdiff
2018-08-24 hansonrJAL-3026 GD#107,128,130,139 build-site.xml commit | commitdiff
2018-08-21 hansonrmc_view references were MCview commit | commitdiff
2018-07-22 hansonrallows for null Jmol viewer commit | commitdiff
2018-05-04 Jim ProcterMerge branch 'bug/JAL-2899' into releases/Release_2_10_... commit | commitdiff
2018-05-01 Jim ProcterJAL-2899 colouring moved from SwingWorker to a backgrou... commit | commitdiff
2018-04-30 Jim ProcterMerge branch 'bug/JAL-2899' into releases/Release_2_10_... commit | commitdiff
2018-04-05 Jim ProcterJAL-2945 resolve model as PDB file. Need to verify... commit | commitdiff
2018-02-02 gmungocJAL-2899 asynchronous Jmol colour updates bug/JAL-2899 commit | commitdiff
2017-10-27 gmungocJAL-1793 spike branch updated to latest commit | commitdiff
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2392_deadlockonpdbdisplay' into... commit | commitdiff
2017-10-24 gmungocJAL-2738 update spike branch with latest commit | commitdiff
2017-10-23 gmungocJAL-1854 keep fallthrough but with comment to suppress... commit | commitdiff
2017-10-23 gmungocJAL-1854 remove fallthrough of switch case (Checkstyle... commit | commitdiff
2017-10-10 Jim ProcterMerge branch 'codereviews/JAL-1990_IProgressIndicator_j... commit | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo commit | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting commit | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch commit | commitdiff
2017-05-29 Jim ProcterMerge branch 'features/JAL-2465_No-mapping_Jmol-structu... commit | commitdiff
2017-05-01 tcofoegbuJAL-2465 bugfix and rerefactor renamed getPdbFile(... commit | commitdiff
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection... commit | commitdiff
2017-03-21 gmungocJAL-2438 check for null FeatureRenderer commit | commitdiff
2017-03-13 gmungocJAL-2438 FeatureColourFinder refactored from FeatureRen... commit | commitdiff
2017-03-08 gmungocJAL-2430 colour columns hidden in alignment gray on... commit | commitdiff
2017-03-07 gmungocJAL-2295 status messages for Chimera attributes set... commit | commitdiff
2017-01-09 gmungocJAL-2371 remove ColourSchemeI.findColour(c), pure inter... commit | commitdiff
2016-12-22 gmungocJAL-2360 structure viewers now using ColourMenuHelper... commit | commitdiff
2016-12-12 gmungocJAL-2632 corrected lookup of residue colour commit | commitdiff
2016-11-25 gmungocMerge branch 'develop' into trialMerge commit | commitdiff
2016-11-22 Jim ProcterMerge branch 'features/JAL-2177_update_jmol_to_14.6... commit | commitdiff
2016-11-10 tcofoegbuJAL-2317 Fixed Chimera command for hiding/showing disti... bug/JAL-2317_jmol_chimera-chain-factorisation commit | commitdiff
2016-11-10 tcofoegbuBugfix to enable accurate chain extraction/association... commit | commitdiff
2016-10-27 tcofoegbuJAL-2177 Jmol update from: Jmol-14.2.14_2015.06.11... commit | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch commit | commitdiff
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch' commit | commitdiff
2016-10-13 gmungocJAL-2044 ensure AAStructureBindingModel.pdbEntry has... commit | commitdiff
2016-10-11 gmungocJAL-2233 reverted changes to Jmol logging levels commit | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... commit | commitdiff
2016-10-05 Jim ProcterJAL-2189 source formatting commit | commitdiff
2016-09-27 gmungocJAL-2233 less verbose logging for Jmol commit | commitdiff
2016-07-11 gmungocfile format enum wip changes commit | commitdiff
2016-06-23 gmungocJAL-2130 now simply viewer.dispose() to close down... commit | commitdiff
2016-06-20 gmungocJAL-2130 call viewer.dispose() on closing Jmol commit | commitdiff
2016-03-22 tcofoegbuJAL-1919 code improvement to make PDB sequence fetcher... commit | commitdiff
2016-02-25 tcofoegbuJAL-1919 initial support for mmCIF using JMol API.... commit | commitdiff
2015-11-11 tcofoegbuJAL-1479 JAL-1957 Added code to enable simultaneous... commit | commitdiff
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 commit | commitdiff
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright commit | commitdiff
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