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Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git] / src / jalview / ext / jmol / JmolParser.java
2023-11-03 James ProcterJAL-4090 JAL-1551 spotlessApply commit | commitdiff
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use... commit | commitdiff
2023-06-30 James ProcterJAL-4216 compute size of annotation using start/end... commit | commitdiff
2023-06-29 James ProcterJAL-4216 compute size of annotation using start/end... commit | commitdiff
2023-05-19 James ProcterMerge branch 'develop' into features/JAL-4134_use_annot... commit | commitdiff
2023-05-01 James ProcterJAL-3858 report errors when trying to parse JSON to... commit | commitdiff
2023-04-19 Ben SoaresJAL-629 Now showing temp fac and secondary structure... commit | commitdiff
2023-03-25 Ben SoaresJAL-629 improvements to argparser toString. Improvement... commit | commitdiff
2023-03-02 Ben SoaresJAL-629 Removal of unnecessary methods. Set pLTTD tempf... commit | commitdiff
2023-03-02 Ben SoaresJAL-629 Some refactoring to allow more flexible use... commit | commitdiff
2023-01-24 James ProcterJAL-629 need to delay call to AlignFile.parse() if... commit | commitdiff
2023-01-11 Ben SoaresJAL-629 refactoring TFType. Remove i18n identification... commit | commitdiff
2022-12-05 Ben SoaresJAL-629 implementation of --tempfac options commit | commitdiff
2022-10-17 Jim ProcterJAL-2349 JAL-3855 Integrate pAE retrieval in StructureF... commit | commitdiff
2022-10-15 Jim ProcterJAL-3855 import pAE when StructureSelectionManager... commit | commitdiff
2022-10-07 Jim ProcterFix for JAL-4075 - don’t write a label in secondary... commit | commitdiff
2022-10-06 Jim ProcterJAL-1551 formatting commit | commitdiff
2022-10-06 Jim ProcterJAL-3895 alphafold colours via pluggable annotation... commit | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 commit | commitdiff
2021-09-21 Ben SoaresJAL-3691 automatic insertion of Locale.ROOT to toUpperC... commit | commitdiff
2021-09-20 Jim ProcterJAL-3829 make sure structure data type reflects actual... commit | commitdiff
2021-09-14 Jim ProcterJAL-3855 detect an alphafold model and import its tempe... commit | commitdiff
2018-11-14 gmungocJAL-3032 don't throw Exception to signal chain not... commit | commitdiff
2018-08-27 hansonrJAL-3026 Jmol functioning; some issues commit | commitdiff
2018-08-21 hansonrmc_view references were MCview commit | commitdiff
2018-06-28 hansonrJAL-3032 DND enabled; additional io changes for File... commit | commitdiff
2018-05-07 Jim ProcterJAL-2321 use StructureImportSettings singleton settings... commit | commitdiff
2018-05-07 Jim ProcterJAL-2321 allow JmolParser to be configured before parsi... commit | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo commit | commitdiff
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList commit | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting commit | commitdiff
2017-06-14 gmungocJAL-2598 Sequence.getSequence return a copy of the... commit | commitdiff
2016-11-25 gmungocMerge branch 'develop' into trialMerge commit | commitdiff
2016-10-27 tcofoegbuJAL-2177 Jmol update from: Jmol-14.2.14_2015.06.11... commit | commitdiff
2016-10-17 tcofoegbuJAL-2262 JAL-2195 Improvement to set PDBId availability... commit | commitdiff
2016-10-11 gmungocMerge branch 'releases/Release_2_10_Branch' into develop commit | commitdiff
2016-10-11 gmungocJAL-2233 reverted changes to Jmol logging levels commit | commitdiff
2016-10-10 tcofoegbuJAL-2262 JAL-2195 bug fix for mapping local structure... commit | commitdiff
2016-10-05 Jim ProcterJAL-2189 source formatting commit | commitdiff
2016-09-27 gmungocJAL-2233 less verbose logging for Jmol commit | commitdiff
2016-09-16 gmungocJAL-2164 removed unused parameters from JmolParser... commit | commitdiff
2016-09-14 Jim ProcterJAL-2164 create RESNUM features with padding the same... commit | commitdiff
2016-09-07 Jim ProcterMerge branch 'develop' into bug/JAL-1803_JAL-2157 commit | commitdiff
2016-09-07 Jim ProcterJAL-1803 JAL-1919 set type when structure file is parsed commit | commitdiff
2016-08-31 tcofoegbuJAL-2148 further enhancment to CA HETATM processing commit | commitdiff
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum commit | commitdiff
2016-08-15 tcofoegbuJAL-1919 Added improvement to ensure consistence of... commit | commitdiff
2016-08-01 tcofoegbuJAL-2164 bugfix to convert insCodes of '\000' to '... commit | commitdiff
2016-07-22 tcofoegbuJAL-2148 Bugfix in structureImportSettings string-to... commit | commitdiff
2016-07-21 tcofoegbuResolve merge conflict for StructureImportSettings commit | commitdiff
2016-07-21 tcofoegbuJAL-2148 fix to heuristically determine chain terminati... commit | commitdiff
2016-07-21 Jim ProcterMerge branch 'apifix/JAL-1926_JAL-2106' into develop commit | commitdiff
2016-07-20 Jim ProcterJAL-1926 JAL-2106 fix name for flag controlling additio... commit | commitdiff
2016-07-19 tcofoegbuJAL-1919 set default structure file format to mmCIF... commit | commitdiff
2016-07-13 tcofoegbuJAL-2135 minor house-keeping commit | commitdiff
2016-07-12 tcofoegbuJAL-2135 NPE bugfix when parsing a structure file with... commit | commitdiff
2016-07-11 gmungocfile format enum wip changes commit | commitdiff
2016-07-08 tcofoegbuJAL-1919 Fixed failing tests, enabled HETATM processing... commit | commitdiff
2016-07-01 tcofoegbuJAL-2135 bugfix for error preventing processing of... commit | commitdiff
2016-06-30 tcofoegbuJAL-1919 updated PDBSequenceFetcherTest and JMol parser... commit | commitdiff
2016-04-06 tcofoegbuJAL-2047 JAL-1919 fixed empty tooltip text when a cell... commit | commitdiff
2016-03-24 tcofoegbuJAL-1919 Added ability to generate temprature factor... commit | commitdiff
2016-03-15 tcofoegbuJAL-1919 refined structure view annotation settings... commit | commitdiff
2016-03-11 tcofoegbuJAL-1818 reimplemented sequence and annotation processi... commit | commitdiff
2016-03-03 tcofoegbuJAL-1919 PDBfile and JmolParser refactor commit | commitdiff
2016-02-25 tcofoegbuJAL-1919 initial support for mmCIF using JMol API.... commit | commitdiff
2016-01-21 tcofoegbuJAL-1919 basic support for importing and viewing mmCIF... commit | commitdiff