git://source.jalview.org / jalview.git / history
? search:
summary | shortlog | log | commit | commitdiff | tree
first ⋅ prev ⋅ next
Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git] / src / jalview / ext / rbvi / chimera / JalviewChimeraBinding.java
2023-11-03 James ProcterJAL-4090 JAL-1551 spotlessApply commit | commitdiff
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use... commit | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 commit | commitdiff
2022-03-02 Jim ProcterJAL-3619 fix up error messages and try to bail quietly... commit | commitdiff
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache... commit | commitdiff
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework... commit | commitdiff
2021-10-18 Jim ProcterJAL-3905 Fix: wait for response when sending mouseovers... bug/r2_11_2/JAL-3904_structureviewermenu commit | commitdiff
2020-06-29 gmungocJAL-3674 more finessed asynchronous structure commands commit | commitdiff
2020-06-26 Jim ProcterJAL-3518 fix highlighting in Jalview for selections... commit | commitdiff
2020-06-26 Jim ProcterJAL-3672 more efficient when debug not enabled commit | commitdiff
2020-06-25 gmungocJAL-2010 unused prototype method removed commit | commitdiff
2020-06-25 gmungocJAL-3518 pull up [get|list]ResidueAttributes to Structu... commit | commitdiff
2020-06-23 gmungocJAL-3518 separation of ChimeraXManager, pull up of... commit | commitdiff
2020-06-23 gmungocJAL-3518 pull up closeViewer() and external viewer... commit | commitdiff
2020-05-26 gmungocJAL-1761 pattern for structure viewer construction... commit | commitdiff
2020-05-21 gmungocJAL-3551 copy Jalview features to Pymol 'p' (with pull... commit | commitdiff
2020-05-15 gmungocJAL-3551 pull up Close Viewer dialog to base class commit | commitdiff
2020-05-11 gmungocJAL-2422 restore saved ChimeraX session from project commit | commitdiff
2020-04-30 gmungocJAL-3551 save structure viewer session refactorings... commit | commitdiff
2020-03-13 gmungocJAL-3551 working proof of concept of Jalview driving... commit | commitdiff
2020-03-03 gmungocJAL-3158 superseded superposeStructures methods removed commit | commitdiff
2020-03-03 gmungocJAL-3518 more pull up / test coverage of structure... commit | commitdiff
2020-02-28 gmungocJAL-3518 basic refactoring / pull up of superposeStruct... commit | commitdiff
2020-02-21 gmungocJAL-3518 more extraction of ChimeraX commands as overrides commit | commitdiff
2020-02-21 gmungocJAL-2422 tidy of methods and parameters commit | commitdiff
2020-02-21 gmungocJAL-2422 general pull-up/removal of common or unused... commit | commitdiff
2020-02-20 gmungocJAL-2422 pull-up refactoring of structure commands... commit | commitdiff
2020-02-04 gmungocJAL-2422 pull up refactoring in preparation for Chimera... commit | commitdiff
2020-01-31 gmungocJAL-2422 temporary hacks removed; use hex colours for... commit | commitdiff
2020-01-30 gmungocJAL-2422 save/restore ChimeraX session commit | commitdiff
2020-01-28 gmungocJAL-2422 ChimeraX added to Preferences commit | commitdiff
2020-01-14 gmungocJAL-2422 proof of concept adaptations for ChimeraX... commit | commitdiff
2019-12-13 gmungocJAL-2422 'label' command to highlight ChimeraX residue... commit | commitdiff
2019-12-13 gmungocJAL-2422 write Jalview features to ChimeraX via command... commit | commitdiff
2019-12-13 gmungocJAL-2422 basic proof of concept of ChimeraX opened... commit | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo commit | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting commit | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch commit | commitdiff
2017-05-29 Jim ProcterMerge branch 'features/JAL-2465_No-mapping_Jmol-structu... commit | commitdiff
2017-05-01 tcofoegbuJAL-2465 bugfix and rerefactor renamed getPdbFile(... commit | commitdiff
2017-04-26 kiramtMerge remote-tracking branch 'origin/develop' into... commit | commitdiff
2017-04-26 kiramtMerge remote-tracking branch 'origin/develop' into... commit | commitdiff
2017-04-24 gmungocJAL-2487 remove redundant refreshGUI to minimise thread... commit | commitdiff
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection... commit | commitdiff
2017-03-13 gmungocJAL-2438 FeatureColourFinder refactored from FeatureRen... commit | commitdiff
2017-03-08 gmungocJAL-2430 colour columns hidden in alignment gray on... commit | commitdiff
2017-03-07 gmungocJAL-2295 status messages for Chimera attributes set... commit | commitdiff
2017-03-01 gmungocMerge branch 'features/JAL-2295setChimeraAttributes... commit | commitdiff
2017-01-09 gmungocJAL-2371 remove ColourSchemeI.findColour(c), pure inter... commit | commitdiff
2016-12-22 gmungocJAL-2360 structure viewers now using ColourMenuHelper... commit | commitdiff
2016-12-12 gmungocJAL-2632 corrected lookup of residue colour commit | commitdiff
2016-12-02 gmungocMerge branch 'develop' into features/JAL-2295setChimera... commit | commitdiff
2016-11-30 Jim ProcterMerge branch 'features/JAL-2320_closeChimeraAction... commit | commitdiff
2016-11-29 gmungocMerge branch 'develop' into features/JAL-2295setChimera... commit | commitdiff
2016-11-25 gmungocMerge branch 'develop' into trialMerge commit | commitdiff
2016-11-23 gmungocMerge branch 'develop' into features/JAL-2295setChimera... commit | commitdiff
2016-11-16 gmungocJAL-2296 unit test for reading Chimera attributes to... commit | commitdiff
2016-11-16 gmungocMerge branch 'develop' into features/JAL-2295setChimera... commit | commitdiff
2016-11-16 gmungocJAL-2296 don't copy attribute with value False commit | commitdiff
2016-11-14 gmungocJAL-2296 new code and refactoring for 'copy Chimera... commit | commitdiff
2016-11-14 gmungocJAL-2295 JAL-2296 skeleton 'attributes to features... commit | commitdiff
2016-11-11 gmungocJAL-2295 (optionally) return Chimera command reply commit | commitdiff
2016-11-10 tcofoegbuJAL-2317 Fixed Chimera command for hiding/showing disti... bug/JAL-2317_jmol_chimera-chain-factorisation commit | commitdiff
2016-11-10 tcofoegbuBugfix to enable accurate chain extraction/association... commit | commitdiff
2016-11-10 gmungocJAL-2320 thread to close Chimera viewer panel if Chimer... features/JAL-2320_closeChimeraAction commit | commitdiff
2016-11-09 gmungocJAL-2295 set attributes commands include feature value... commit | commitdiff
2016-11-08 gmungocJAL-2295 JAL-1596 method to pass a command script file... commit | commitdiff
2016-11-08 gmungocJAL-2295 extracted AtomSpecModel for reuse in Chimera... commit | commitdiff
2016-11-07 gmungocJAL-2295 (unoptimised) write Jalview features as Chimer... commit | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch commit | commitdiff
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch' commit | commitdiff
2016-10-13 gmungocJAL-2044 ensure AAStructureBindingModel.pdbEntry has... commit | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... commit | commitdiff
2016-07-12 gmungocFileFormat enum wip changes commit | commitdiff
2016-05-31 gmungocJAL-2123 use "rlabel" command to highlight with label... commit | commitdiff
2016-04-04 Jim ProcterJAL-2010 refactoring todo commit | commitdiff
2016-02-12 gmungocJAL-2010 simple prototype of 'Highlight Selection'... commit | commitdiff
2016-02-09 tcofoegbuJAL-1957 deleted stale comment commit | commitdiff
2016-02-09 tcofoegbuJAL-1957 enabled multi-chain mapping and highlight... commit | commitdiff
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 commit | commitdiff
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... commit | commitdiff
2015-08-26 gmungocJAL-1596 check for null pointer (thread running after... commit | commitdiff
2015-08-19 gmungocJAL-1742 suppress 'add chain' option for Jmol, pull... commit | commitdiff
2015-06-05 gmungocJAL-1622 fix bug computing superposition + associated... commit | commitdiff
2015-06-04 gmungocJAL-1750 View Mapping scoped to that viewer's mappings... commit | commitdiff
2015-06-04 gmungocJAL-1743 new Chimera menu option to 'fit to window' commit | commitdiff
2015-06-04 gmungocJAL-1757 match only first altloc CA in PDB structure... commit | commitdiff
2015-05-20 gmungocJAL-1741 nucleotide-aware colour schemes applied to... commit | commitdiff
2015-05-07 gmungocJAL-1575 bare bones RestHandler added commit | commitdiff
2015-05-06 gmungocJAL-1725 parse atomSpec with submodel; debug output... commit | commitdiff
2015-05-05 gmungocJAL-1725 first version of Jetty server / chimera select... commit | commitdiff
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch commit | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... commit | commitdiff
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... commit | commitdiff
2015-01-26 gmungocJAL-1588 restoring saved Chimera session(s) commit | commitdiff
2015-01-08 gmungocJAL-1588 part work save/restore of Chimera session commit | commitdiff
2015-01-07 gmungocJAL-1588 refactoring to StructureViewerBase and related commit | commitdiff
2015-01-06 gmungocJAL-1588 refactoring prior to 'save Chimera project' commit | commitdiff
2014-12-28 gmungocMerge branch 'features/JAL-1596ChimeraREST' into develop commit | commitdiff
next