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Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git] / src / jalview / fts /
2023-11-13 James ProcterJAL-4236 don’t look for headers in JalviewJS tree | commitdiff
2023-11-13 James ProcterJAL-4090 fix JAL-4236 - just put the name of the class... tree | commitdiff
2023-11-03 James ProcterJAL-4090 JAL-1551 spotlessApply tree | commitdiff
2023-10-23 James ProcterJAL-4311 failing test case for 3d-beacons epas1_human... tree | commitdiff
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use... tree | commitdiff
2023-05-20 Ben SoaresJAL-3416 Removed another internal Frame icon from title bar tree | commitdiff
2023-01-24 James ProcterMerge branch 'develop' (JAL-4102 2.11.2.6 patch release... features/r2_11_2_alphafold/JAL-2349_JAL-3855 tree | commitdiff
2023-01-20 Jim ProcterJAL-4114 patch REST client for changed JSON schema... tree | commitdiff
2023-01-20 Jim ProcterJAL-4114 formatting tree | commitdiff
2022-10-14 Jim ProcterMerge branch 'features/JAL-3895_alphafoldcolours' into... tree | commitdiff
2022-07-25 Ben SoaresJAL-4036 moved a comment block tree | commitdiff
2022-07-22 Ben SoaresJAL-4036 Changes made from code review CR-JAL-265 tree | commitdiff
2022-07-22 Ben SoaresJAL-4036 Add getDbName to the GFTSPanelI and add an... tree | commitdiff
2022-07-22 Ben SoaresJAL-4036 removing the query field code from the dropdow... tree | commitdiff
2022-07-21 Ben SoaresJAL-4036 Don't autosearch changing index when autosearc... tree | commitdiff
2022-07-21 Ben SoaresJAL-4036 add search fieldname to dropdown list tree | commitdiff
2022-07-21 Ben SoaresJAL-4036 New configuration, target and pagination proce... tree | commitdiff
2022-06-30 Jim ProcterJAL-4036 use the legacy endpoint (and report the FTS... tree | commitdiff
2022-06-24 Jim ProcterJAL-3855 update EBI Alphafold barcoded URL generation... tree | commitdiff
2022-03-08 Jim ProcterJAL-3746 apply copyright to source tree | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 tree | commitdiff
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache... tree | commitdiff
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework... tree | commitdiff
2021-11-19 Jim ProcterJAL-3926 disable autosearch by default tree | commitdiff
2021-09-24 Jim ProcterJAL-3829 open web page for 3d beacons structure by... features/r2_11_2/JAL-3829_3dbeacons tree | commitdiff
2021-09-24 Jim ProcterJAL-3829 abstract essential TDB metadata from the user... tree | commitdiff
2021-09-21 Ben SoaresJAL-3691 automatic insertion of Locale.ROOT to toUpperC... tree | commitdiff
2021-09-20 Jim ProcterJAL-3829 throw the exception even if it has no message tree | commitdiff
2021-09-14 Jim ProcterJAL-3829 move mock query and responses to files tree | commitdiff
2021-09-14 Jim ProcterJAL-3829 allow multiple URL mocks and include P01308... tree | commitdiff
2021-09-12 Jim ProcterJAL-3829 JalviewJS workarounds/patches tree | commitdiff
2021-09-11 Jim ProcterJAL-3829 ensure tests use mocked service - proper excep... tree | commitdiff
2021-09-10 Jim ProcterJAL-3829 point at production 3d-beacons url tree | commitdiff
2021-09-06 Jim ProcterJAL-3829 look up column in FTS data tree | commitdiff
2021-09-06 Jim ProcterJAL-3829 mocking for PDBFTS for related query to Unipro... tree | commitdiff
2021-09-03 Jim ProcterJAL-3829 mocking for testing 3D-Beacons FTS endpoint tree | commitdiff
2021-09-03 Jim ProcterJAL-3855 don’t need to query Alphafold2 repository... tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 Structure chooser specific FTS interface and... tree | commitdiff
2021-08-30 Jim ProcterMerge branch 'feature/JAL-3855_ebi_alphafold_import... tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 3d-beacons structure chooser logic (not yet... tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 proof in principle 3d-beacons sequence fetcher... tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 fixed up the 3d-beacons data columns definitio... tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 JAL-2176 - TODO re unused argument in FTSRestC... tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 Javadoc for FTSColumnPreferences tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 removed unneeded attribute in FTS core tree | commitdiff
2021-08-30 arngucciJAL-3832 Gui working, with 3DBeacons parameters tree | commitdiff
2021-07-27 Jim ProcterJAL-3855 check for existence of an alpha fold model... tree | commitdiff
2021-04-06 arngucciJAL-3829 more testing wit tdbeacons data columns and... arnaud/develop tree | commitdiff
2021-04-01 ArnaldoJAL-3829 attempt to fix my changes to follow the Jira... tree | commitdiff
2021-03-29 Arnaldofixed last commit tree | commitdiff
2021-03-29 ArnaldoRequest now parses the whole structures, need to fix... tree | commitdiff
2021-03-25 ArnaldoTDB.executeRequest fix & test passed tree | commitdiff
2021-03-25 ArnaldoCreated 3Dbeacons data_columns.txt Test passed for... tree | commitdiff
2021-03-15 Arnaldoadded untracked parsing attempts files tree | commitdiff
2021-03-15 ArnaldoAdding tests for 3DB, currently 2/4 corrects on PanelTest tree | commitdiff
2021-03-02 ArnaldoFirst commit of 3DB FTS Panel & Restclient tree | commitdiff
2020-08-17 Jim ProcterJAL-3490 merged with 2.11.2 develop tree | commitdiff
2020-07-06 gmungocJAL-3311 JAL-3141 JAL-3144 tidying obsolete message... tree | commitdiff
2020-03-30 gmungocJAL-3210 debug logging commented out tree | commitdiff
2019-12-11 gmungocJAL-3490 revised layout and search algorithm (more... tree | commitdiff
2019-10-08 gmungocMerge branch 'develop' into Jalview-JS/develop tree | commitdiff
2019-07-30 gmungocJAL-3388 correct class for column 0 Ref Sequence bug/JAL-3388structureChooserSorting tree | commitdiff
2019-07-16 gmungocMerge branch 'develop' into Jalview-JS/develop tree | commitdiff
2019-07-16 gmungocJAL-2987 tolerate null double values when formatting... tree | commitdiff
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge tree | commitdiff
2019-06-04 gmungocJAL-2386 avoid duplicate pdbids in free text query bug/JAL-3286duplicatePdbQuery tree | commitdiff
2019-04-16 hansonrmissing check for JavaScript in client response for... tree | commitdiff
2019-04-09 hansonrcode formatting only tree | commitdiff
2019-04-04 gmungocJAL-3220 unneeded main methods removed tree | commitdiff
2019-04-03 hansonrreplacing @j2sNative with @j2sIgnore where appropriate... tree | commitdiff
2019-04-03 hansonrj2sNative clean-up. Fixes problem with second try of... tree | commitdiff
2019-04-01 hansonrJSON refactoring of a few methods; fixing JavaScript... tree | commitdiff
2019-03-27 hansonrisJS cleanup tree | commitdiff
2019-03-13 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2019-02-12 gmungocJAL-3032 default Autosearch to off for JalviewJS tree | commitdiff
2019-01-26 hansonrJalview.isJS() --> Platform.isJS(), DBRefEntry[] -... tree | commitdiff
2019-01-25 hansonrJSON refactoring tree | commitdiff
2018-11-11 hansonradds static declaration of AJAX-readable domains tree | commitdiff
2018-11-01 gmungocMerge branch 'feature/JAL-3144noJTree' into tree | commitdiff
2018-10-30 gmungocJAL-3144 query URL corrected tree | commitdiff
2018-10-30 gmungocJAL-3144 spelling, Javadoc, abstract method for JalviewJS tree | commitdiff
2018-10-29 gmungocJAL-3144 SequenceFetcher without JDatabaseTree tree | commitdiff
2018-08-16 gmungocJAL-3038 workaround to replace editable combobox with... tree | commitdiff
2018-07-25 hansonrJAL-3026 Java 8 upgrade and JTabbedPane tree | commitdiff
2018-07-06 hansonrJAL-3026 all tabbed panes use JavaScript option tree | commitdiff
2018-07-05 hansonrJAL-3026 comment in main test method in PDbFtsrestClien... tree | commitdiff
2018-07-05 hansonrJAL-3026 fixes MigLayout, JSON parser tree | commitdiff
2018-07-04 hansonrJAL-3026 implements simple REST client tree | commitdiff
2018-05-21 gmungocJAL-2814 help links from PDB and Uniprot FTS panels tree | commitdiff
2018-05-04 Jim ProcterJAL-2976 patch NPE when trying to open Uniprot FTS tree | commitdiff
2018-02-23 Jim ProcterMerge branch 'features/JAL-2885UniprotHttps' into relea... tree | commitdiff
2018-01-30 gmungocJAL-1793 update spike build to latest incl stop and... tree | commitdiff
2018-01-18 gmungocJAL-2810 JAL-2886 i18n tree | commitdiff
2018-01-16 gmungocJAL-2885 uniprot now https, uniprot/ensembl/pfam/xfam... tree | commitdiff
2017-11-15 gmungocJAL-2835 spike updated with latest tree | commitdiff
2017-11-13 Jim ProcterJAL-2810 auto search checkbox state stored as user... tree | commitdiff
2017-11-13 Jim ProcterJAL-2810 mainFramTabs -> tabs tree | commitdiff
2017-11-07 Jim ProcterJAL-2810 i18n tab label tree | commitdiff
2017-11-07 Jim ProcterJAL-2810 working back button shown for bulk ID retrieva... tree | commitdiff
2017-11-07 Jim ProcterJAL-2810 bulk fetch for PDB IDs tree | commitdiff
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