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Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git] / src / jalview / gui / AlignmentPanel.java
2023-11-03 James ProcterJAL-4090 JAL-1551 spotlessApply commit | commitdiff
2023-11-01 James ProcterMerge branch 'develop' into patch/JAL-4281_idwidthandan... commit | commitdiff
2023-10-01 James ProcterJAL-244 ensure background is completely filled with... commit | commitdiff
2023-10-01 James ProcterJAL-244 export image with full width IDs regardless... commit | commitdiff
2023-10-01 James ProcterJAL-244 JAL-4091 allow calculation of label id width... commit | commitdiff
2023-10-01 James ProcterJAL-244 JAL-4091 FIXME for JAL-3362 patch testCalculate... commit | commitdiff
2023-09-29 James ProcterJAL-244 JAL-4090 use current IdWidth when exporting... commit | commitdiff
2023-09-13 Ben SoaresJAL-4274 Use Cache BITMAP_* if no other image restricti... commit | commitdiff
2023-09-08 James ProcterJAL-4281 reinstate access to legacy id width calculatio... commit | commitdiff
2023-09-07 James ProcterJAL-4273 release notes for visible adjuster marks,... commit | commitdiff
2023-09-06 James ProcterJAL-4258 remove unnecessary ‘this’ commit | commitdiff
2023-08-23 Ben SoaresJAL-4250 Simplification of polygons and adjustments... commit | commitdiff
2023-08-18 Ben SoaresMerge branch 'feature/JAL-244_Automatically_adjust_left... commit | commitdiff
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use... commit | commitdiff
2023-08-09 Ben SoaresJAL-244 Fix window size narrow adjustment not becoming... feature/JAL-244_Automatically_adjust_left_margin_to_avoid_cropping_annotation_labels commit | commitdiff
2023-08-08 Ben SoaresJAL-244 Fix mismatched vertical positioning of sequence... commit | commitdiff
2023-08-04 Ben SoaresJAL-244 Adjust wrapped alignment widths to always maint... commit | commitdiff
2023-08-01 Ben SoaresJAL-244 More control of automatic idWidth adjustments... commit | commitdiff
2023-07-27 Ben SoaresJAL-244 Allow adjusting Id column width in wrap mode... commit | commitdiff
2023-07-21 Ben SoaresJAL-244 Fixed idWidth labels in headless mode for non... commit | commitdiff
2023-07-20 Ben SoaresJAL-244 More accurate width calculation, allow increase... commit | commitdiff
2023-07-19 Ben SoaresJAL-244 Changes to Annotation labels width now adjusts... commit | commitdiff
2023-06-07 James ProcterJAL-4195 add exception handling for all image output... commit | commitdiff
2023-05-22 Ben SoaresJAL-629 --structureimage with formatting args. commit | commitdiff
2023-05-19 James ProcterJAL-1551 spotlessApply commit | commitdiff
2023-05-11 Ben SoaresJAL-629 Fix --tempfac. Hide non-working --notempfac... commit | commitdiff
2023-05-02 Ben SoaresJAL-629 Add --renderer arg/subval for vector output... commit | commitdiff
2023-02-23 James ProcterJAL-4133 update validChar width when font is changed... commit | commitdiff
2023-01-31 James ProcterJAL-1713 update from Jalview 2.11.3 develop commit | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 commit | commitdiff
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache... commit | commitdiff
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework... commit | commitdiff
2022-02-07 Jim ProcterMerge branch 'feature/JAL-1713_overviewInProject' into... commit | commitdiff
2021-12-02 Jim ProcterJAL-3904 simple method to make an alignPanel the curren... commit | commitdiff
2020-12-17 gmungocJAL-1713 close and replace auto-opened Overview with... commit | commitdiff
2020-12-12 gmungocJAL-1713 JAL-3119 JAL-3785 refactored get/set Overview... commit | commitdiff
2020-03-30 gmungocMerge branch 'develop' into Jalview-JS/develop commit | commitdiff
2020-03-09 gmungocJAL-3412 update layout whenever desired id width changes testbuild/JAL-3412_getIdWidth_test commit | commitdiff
2019-10-08 gmungocMerge branch 'develop' into Jalview-JS/develop commit | commitdiff
2019-08-19 gmungocJAL-3412 calculateIdWidth - more consistency, constants... commit | commitdiff
2019-07-29 gmungocJAL-3386 correct wrapped width calculation for headless... commit | commitdiff
2019-07-29 gmungocJAL-3377 more reused of SeqCanvas.computeWrappedGeometry commit | commitdiff
2019-07-29 gmungocJAL-3377 Javadoc added for getWrappedHeight() commit | commitdiff
2019-07-29 gmungocJAL-3377 include seq-annotation spacing in getWrappedHe... commit | commitdiff
2019-04-18 hansonr// BH 2018.04.18 comment: addNotify() is not appropriat... commit | commitdiff
2019-04-18 hansonrremoves unnecessary clearFastPaint commit | commitdiff
2019-04-18 hansonrhack for fastpaint Java bug upshifting one line after... commit | commitdiff
2019-04-18 hansonradds an explicit clearing of the SeqCanvas fastPaint... commit | commitdiff
2019-03-13 gmungocMerge branch 'develop' into trialMerge commit | commitdiff
2019-03-11 gmungocMerge branch 'feature/JAL-3127_seqidChainshading' into... commit | commitdiff
2019-03-04 gmungocMerge branch 'bug/JAL-3099alignmentVisibleWidth' into... commit | commitdiff
2019-02-22 gmungocJAL-2915 don't recalculate Overview on scroll to positi... commit | commitdiff
2019-01-18 hansonrcanvas line/font/pixel fixes; menu accelerators; commit | commitdiff
2019-01-15 hansonrremoval of AlignmentFrame lines commit | commitdiff
2018-12-10 hansonrFaster JTable processing; fixes Annotation painting... commit | commitdiff
2018-12-06 Ben SoaresJAL-3130 incorporating feature/JAL-3063jaxbNoCastor... commit | commitdiff
2018-10-17 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into Jalview-BH... commit | commitdiff
2018-10-16 Jim Procterviewport flag to indicate when structure view needs... commit | commitdiff
2018-09-14 gmungocJAL-3116 parse EMBL XML with JAXB (todo: update unit... commit | commitdiff
2018-09-10 gmungocJAL-3099 use Alignment.getVisibleWidth() where wanted bug/JAL-3099alignmentVisibleWidth commit | commitdiff
2018-09-06 Jim ProcterJAL-2854 compute visible annotation panel height and... commit | commitdiff
2018-08-30 gmungocMerge branch 'bug/JAL-247pngShowHiddenSeqMarks' into... commit | commitdiff
2018-08-28 gmungocJAL-247 comment to clarify wrapped print algorithm commit | commitdiff
2018-08-28 gmungocJAL-247 print/export wrapped uses common code to draw... commit | commitdiff
2018-08-28 gmungocJAL-247 draw/print sequence ids now uses common code... commit | commitdiff
2018-08-27 gmungocJAL-247 comment to clarify wrapped print algorithm bug/JAL-247pngShowHiddenSeqMarks commit | commitdiff
2018-08-24 gmungocJAL-247 print/export wrapped uses common code to draw... commit | commitdiff
2018-08-24 gmungocJAL-247 draw/print sequence ids now uses common code... commit | commitdiff
2018-07-23 gmungocJAL-3048 all image export (alignment, tree, PCA, Jmol... commit | commitdiff
2018-07-20 gmungocJAL-3048 JalviewJS compliant use of LineartOptions... commit | commitdiff
2018-07-19 gmungocJAL-3048 inlined 1-line methods, small refactor of... commit | commitdiff
2018-07-09 gmungocJAL-1858 separate method highlightSearchResults with... commit | commitdiff
2018-05-25 gmungocJAL-2992 simpler heuristic for available height bug/JAL-2992panelHeight commit | commitdiff
2018-03-13 gmungocJAL-2913 use FIGURE_FIXEDIDWIDTH (not FIGURE_USERIDWIDTH) commit | commitdiff
2018-03-07 gmungocJAL-2913 use FIGURE_USERIDWIDTH for fixed id width... commit | commitdiff
2018-02-27 Jim ProcterMerge branch 'feature/JAL-2759' into merge/JAL-2759_2104 commit | commitdiff
2018-02-22 Jim ProcterMerge branch 'bug/JAL-2666' into releases/Release_2_10_... commit | commitdiff
2018-02-08 gmungocJAL-2666 basic initial fix for split screen scroll bug commit | commitdiff
2018-01-25 kiramtJAL-2778 Reinstate id width adjuster commit | commitdiff
2018-01-15 kiramtJAL-2759 Rename findColumnPosition and adjustForHiddenC... commit | commitdiff
2017-11-06 kiramtJAL-2778 replace setScrollValues call in AlignmentPanel... commit | commitdiff
2017-11-03 kiramtJAL-2778 Changed local repaint to alignment repaint... commit | commitdiff
2017-10-27 gmungocJAL-1793 spike branch updated to latest commit | commitdiff
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2727closeAllFreeMemory' into... commit | commitdiff
2017-10-24 Jim ProcterMerge branch 'features/JAL-2608closeOverview' into... commit | commitdiff
2017-10-24 gmungocJAL-2738 update spike branch with latest commit | commitdiff
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2609attemptedmerge' into develop commit | commitdiff
2017-10-23 Jim ProcterJAL-2609 remove unused AlignPanel.fastPaint flag and... commit | commitdiff
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2739' into develop commit | commitdiff
2017-10-12 Jim ProcterJAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview commit | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo commit | commitdiff
2017-09-22 kiramtJAL-2739 Fix ported to 2.10.3 commit | commitdiff
2017-09-15 gmungocJAL-2728 limit divider to ensure seqs visible (wip!) commit | commitdiff
2017-09-13 gmungocJAL-2727 null additional references on close commit | commitdiff
2017-09-12 gmungocJAL-2727 ensure ViewportRanges (and gapcounts) are... commit | commitdiff
2017-09-07 gmungocJAL-2511 invalidate scale panel holder on font change... commit | commitdiff
2017-09-07 gmungocJAL-2511 invalidate scale panel holder on font change... bug/JAL-2511idAlignment commit | commitdiff
2017-09-06 Jim ProcterJAL-2587 makes sure idWidthAdjuster is resized when... commit | commitdiff
2017-09-06 Jim ProcterJAL-2587 makes sure idWidthAdjuster is resized when... commit | commitdiff
2017-09-05 Jim ProcterMerge branch 'master' into portforward/JAL-2675_2102b1t... commit | commitdiff
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