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Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git] / src / jalview / gui / ChimeraViewFrame.java
2023-11-03 James ProcterJAL-4090 JAL-1551 spotlessApply commit | commitdiff
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use... commit | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 commit | commitdiff
2022-03-02 Jim ProcterJAL-3619 fix up error messages and try to bail quietly... commit | commitdiff
2022-03-02 Jim ProcterJAL-3619 fix up warning message and minimal patch to... commit | commitdiff
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache... commit | commitdiff
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework... commit | commitdiff
2021-12-08 Jim ProcterJAL-3616 update messages/tooltips/menu items to use... commit | commitdiff
2021-10-18 Jim ProcterJAL-3904 override buildActionMenu to add in additional... commit | commitdiff
2021-09-02 gmungocJAL-3509 coerce RESNUM to hidden (really) after fetchin... commit | commitdiff
2020-06-29 gmungocJAL-3518 corrected pulled up focusView() command commit | commitdiff
2020-06-25 gmungocJAL-3518 pull up [get|list]ResidueAttributes to Structu... commit | commitdiff
2020-05-26 gmungocJAL-1761 pattern for structure viewer construction... commit | commitdiff
2020-05-21 gmungocJAL-3551 copy Jalview features to Pymol 'p' (with pull... commit | commitdiff
2020-05-19 gmungocMerge branch 'develop' into feature/JAL-3551Pymol commit | commitdiff
2020-05-15 gmungocJAL-3551 pull up Close Viewer dialog to base class commit | commitdiff
2020-05-11 gmungocJAL-2422 JAL-3551 viewer text/variables generalised... commit | commitdiff
2020-04-30 gmungocJAL-3551 save structure viewer session refactorings... commit | commitdiff
2020-03-13 gmungocJAL-3551 working proof of concept of Jalview driving... commit | commitdiff
2020-02-28 gmungocJAL-3518 basic refactoring / pull up of superposeStruct... commit | commitdiff
2020-02-21 gmungocJAL-3518 more extraction of ChimeraX commands as overrides commit | commitdiff
2020-02-21 gmungocJAL-2422 tidy of methods and parameters commit | commitdiff
2020-02-20 gmungocJAL-2422 pull-up refactoring of structure commands... commit | commitdiff
2020-02-06 gmungocJAL-3509 coerce RESNUM to hidden (really) after fetchin... commit | commitdiff
2020-02-04 gmungocJAL-2422 pull up refactoring in preparation for Chimera... commit | commitdiff
2020-01-31 gmungocJAL-2422 temporary hacks removed; use hex colours for... commit | commitdiff
2020-01-30 gmungocJAL-2422 save/restore ChimeraX session commit | commitdiff
2020-01-14 gmungocJAL-2422 proof of concept adaptations for ChimeraX... commit | commitdiff
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge commit | commitdiff
2019-05-02 gmungocJAL-3244 renamed Platform method for clarity bug/JAL-3244jmolWindows commit | commitdiff
2018-07-23 gmungocJAL-3048 all image export (alignment, tree, PCA, Jmol... commit | commitdiff
2018-05-04 Jim ProcterJAL-2948 transfer features/annotation is now available... commit | commitdiff
2018-04-12 gmungocJAL-2944 tidies for review comments commit | commitdiff
2018-04-09 Jim ProcterJAL-1847 JAL-2944 make superposition step a configurabl... commit | commitdiff
2018-04-05 Jim ProcterJAL-2944 remove modal prompt logic and expose methods... commit | commitdiff
2018-04-05 Jim ProcterJAL-2944 pull up structure viewer discovery routine... commit | commitdiff
2017-10-27 gmungocJAL-1793 spike branch updated to latest commit | commitdiff
2017-10-10 Jim ProcterMerge branch 'codereviews/JAL-1990_IProgressIndicator_j... commit | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo commit | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting commit | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch commit | commitdiff
2017-05-29 Jim ProcterMerge branch 'features/JAL-2465_No-mapping_Jmol-structu... commit | commitdiff
2017-05-02 gmungocJAL-2447 EXPERIMENTAL preference (option in Tools menu) features/JAL-2447experimentalFlag commit | commitdiff
2017-05-01 tcofoegbuJAL-2465 missed commit for refactore renaming of getPdb... commit | commitdiff
2017-03-21 gmungocJAL-2243 update discovered features on opening structur... commit | commitdiff
2017-03-07 gmungocJAL-2295 status messages for Chimera attributes set... commit | commitdiff
2017-03-02 gmungocJAL-2295 make 'Jmol' menu appear; enable/disable Superp... commit | commitdiff
2017-03-01 gmungocMerge branch 'features/JAL-2295setChimeraAttributes... commit | commitdiff
2016-12-22 gmungocJAL-2360 structure viewers now using ColourMenuHelper... commit | commitdiff
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum, commit | commitdiff
2016-12-12 gmungocJAL-1544 backgroud -> background commit | commitdiff
2016-12-08 gmungocMerge branch 'bug/JAL-2358phantomChimera' into spikes... commit | commitdiff
2016-12-08 gmungocJAL-2358 ensure mappings removed on close Chimera;... bug/JAL-2358phantomChimera commit | commitdiff
2016-11-29 gmungocMerge branch 'develop' into features/JAL-2295setChimera... commit | commitdiff
2016-11-28 gmungocMerge branch 'develop' into trialMerge commit | commitdiff
2016-11-25 gmungocMerge branch 'develop' into trialMerge commit | commitdiff
2016-11-24 tcofoegbuJAL-2326 updated references of JOptionPane to JvOptionPane commit | commitdiff
2016-11-16 gmungocMerge branch 'develop' into features/JAL-2295setChimera... commit | commitdiff
2016-11-14 gmungocJAL-2295 JAL-2296 skeleton 'attributes to features... commit | commitdiff
2016-11-11 gmungocJAL-2295 improved integrity of 'isFinishedInit' flag commit | commitdiff
2016-11-11 gmungocJAL-2295 set finishedInit to false before checking... commit | commitdiff
2016-11-10 tcofoegbuBugfix to enable accurate chain extraction/association... commit | commitdiff
2016-11-07 gmungocJAL-2295 (unoptimised) write Jalview features as Chimer... commit | commitdiff
2016-11-03 gmungocJAL-2295 step 1 new menu item to transfer Jalview attri... commit | commitdiff
2016-10-27 gmungocJAL-2287 treat Escape like Cancel in dialog box commit | commitdiff
2016-10-26 gmungocJAL-2287 Cancel option on Close Chimera? dialog commit | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch commit | commitdiff
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch' commit | commitdiff
2016-10-13 gmungocJAL-2044 include model name in progress bar message... commit | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... commit | commitdiff
2016-09-07 Jim ProcterJAL-2191 comments re chimera view code redundancy and... commit | commitdiff
2016-07-11 gmungocfile format enum wip changes commit | commitdiff
2016-03-24 gmungocJAL-1705 removed experimental 'highlight selection... commit | commitdiff
2016-02-12 gmungocJAL-2010 simple prototype of 'Highlight Selection'... commit | commitdiff
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 commit | commitdiff
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports commit | commitdiff
2015-09-04 Jim ProcterJAL-1847 added AUTOSUPERIMPOSE property which can be... commit | commitdiff
2015-08-19 gmungocJAL-1742 suppress 'add chain' option for Jmol, pull... commit | commitdiff
2015-08-07 tcofoegbuJAL-1824 updated caching procedure for pdb entries... commit | commitdiff
2015-06-18 gmungocJAL-1544 typos in comments commit | commitdiff
2015-06-10 gmungocJAL-1764 save Chimera/Jmol state as separate entries... commit | commitdiff
2015-06-05 gmungocJAL-1588 error dialog if Chimera project opened on... commit | commitdiff
2015-06-05 gmungocJAL-1622 fix bug computing superposition + associated... commit | commitdiff
2015-06-05 gmungocJAL-1746 return empty string rather than null in getSta... commit | commitdiff
2015-06-04 gmungocJAL-1750 View Mapping scoped to that viewer's mappings... commit | commitdiff
2015-06-04 gmungocJAL-1743 new Chimera menu option to 'fit to window' commit | commitdiff
2015-06-04 gmungocJAL-1743 View Chain sub-menu now being populated commit | commitdiff
2015-06-04 gmungocJAL-1753 ChimeraViewFrame hosts its own ProgressBar commit | commitdiff
2015-06-04 gmungocJAL-1742 don't offer to align another chain to the... commit | commitdiff
2015-05-05 gmungocJAL-1725 first version of Jetty server / chimera select... commit | commitdiff
2015-03-30 gmungocJAL-1596 refactoring to allow unit tests to start and... commit | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... commit | commitdiff
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... commit | commitdiff
2015-01-26 gmungocMerge branch 'features/JAL-1588saveChimeraSession'... commit | commitdiff
2015-01-26 gmungocJAL-1588 restoring saved Chimera session(s) commit | commitdiff
2015-01-08 gmungocJAL-1588 part work save/restore of Chimera session commit | commitdiff
2015-01-07 gmungocJAL-1588 refactoring to StructureViewerBase and related commit | commitdiff
2015-01-06 gmungocJAL-1588 refactoring prior to 'save Chimera project' commit | commitdiff
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