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[jalview.git] / src / jalview / gui / Desktop.java

2023-05-26	Ben Soares	JAL-4125 Fixed non-closing external viewers, also added...	blob \| commitdiff
2023-05-26	Ben Soares	Merge branch 'develop' into feature/JAL-3416_update_to_... feature/JAL-3416_update_to_flatlaf_3.1.1_with_unpacked_native_libraries	blob \| commitdiff \| diff to current
2023-05-25	Ben Soares	JAL-3820 Create and use 'Jalview app' symblinks to...	blob \| commitdiff \| diff to current
2023-05-25	Ben Soares	JAL-4186 Turn JvOptionPane Callable<Void> handlers...	blob \| commitdiff \| diff to current
2023-05-05	Ben Soares	JAL-629 test fixes	blob \| commitdiff \| diff to current
2023-03-28	Ben Soares	JAL-629 Opening files in new windows. not working yet	blob \| commitdiff \| diff to current
2023-03-24	Ben Soares	Merge branch 'develop' into features/r2_11_2_alphafold...	blob \| commitdiff \| diff to current
2023-03-24	Ben Soares	JAL-629 Test tidyup	blob \| commitdiff \| diff to current
2023-03-23	Ben Soares	JAL-629 refactor ArgParser and helper classes all to...	blob \| commitdiff \| diff to current
2023-03-20	James Procter	JAL-4150 test and quick patch copying code from AlignFr...	blob \| commitdiff \| diff to current
2023-03-17	Ben Soares	JAL-629 All applications System.exits going through...	blob \| commitdiff \| diff to current
2023-03-15	Ben Soares	JAL-629 Commands more objecty, less classy. FileLoader...	blob \| commitdiff \| diff to current
2023-02-13	Ben Soares	Merge branch 'merge/JAL-1988_JAL-3772+JAL-3416+JAL...	blob \| commitdiff \| diff to current
2023-02-13	Ben Soares	JAL-4125 Move confirmation of closing external viewer...	blob \| commitdiff \| diff to current
2023-02-09	Ben Soares	JAL-4125 Additions to JvOptionPane and QuitHandler...	blob \| commitdiff \| diff to current
2023-01-17	Ben Soares	JAL-3416 No longer needed	blob \| commitdiff \| diff to current
2023-01-16	Ben Soares	JAL-3416 More tweaking of FlatLaf. Problem with macOS...	blob \| commitdiff \| diff to current
2022-12-08	Ben Soares	JAL-629 fix opening files	blob \| commitdiff \| diff to current
2022-11-23	Ben Soares	JAL-629 Doing things with the command line arguments	blob \| commitdiff \| diff to current
2022-11-16	Ben Soares	Merge branch 'improvement/JAL-3416_default_to_LIVE_DRAG...	blob \| commitdiff \| diff to current
2022-11-16	Ben Soares	JAL-3416 make flatlaf default for linux improvement/JAL-3416_default_to_LIVE_DRAG_MODE_for_flatlaf	blob \| commitdiff \| diff to current
2022-11-09	Ben Soares	Merge branch 'bug/JAL-1988_JAL-3772_improved_quit_handl...	blob \| commitdiff \| diff to current
2022-11-09	Ben Soares	JAL-1988 JAL-3772 Test for FORCE_QUIT whilst saving... bug/JAL-1988_JAL-3772_improved_quit_handling	blob \| commitdiff \| diff to current
2022-11-04	Ben Soares	JAL-1998 JAL-3772 JAL-3416 Merge conflict resolution...	blob \| commitdiff \| diff to current
2022-11-03	Ben Soares	JAL-1988 JAL-3772 Tidying of unspecified Callable decla...	blob \| commitdiff \| diff to current
2022-11-02	Ben Soares	JAL-1988 JAL-3772 Moving packages to somewhere more...	blob \| commitdiff \| diff to current
2022-11-01	Ben Soares	JAL-3416 set flatlaf default drag mode to LIVE_DRAG_MODE	blob \| commitdiff \| diff to current
2022-10-28	Ben Soares	JAL-1988 JAL-3772 Removed 'Wait' button from waitDialog...	blob \| commitdiff \| diff to current
2022-10-24	Ben Soares	JAL-1988 JAL-3772 Non-blocking modal dialogs for unsave...	blob \| commitdiff \| diff to current
2022-09-23	Ben Soares	JAL-1988 JAL-3772 Quit confirmation dialog boxes with...	blob \| commitdiff \| diff to current
2022-08-08	Jim Procter	Merge branch 'task/JAL-3991_check_actual_JAVA_VERSION_a...	blob \| commitdiff \| diff to current
2022-06-13	Ben Soares	JAL-1988 Moved APQHandlers to jalview.jbgui and called...	blob \| commitdiff \| diff to current
2022-04-06	Ben Soares	JAL-3991 Made info displayed only when needed (Java...	blob \| commitdiff \| diff to current
2022-04-06	Ben Soares	JAL-3991 Added information output about the slightly...	blob \| commitdiff \| diff to current
2022-03-08	Jim Procter	JAL-3438 spotless for 2.11.2.0	blob \| commitdiff \| diff to current
2022-03-04	Jim Procter	JAL-3746 JAL-3811 document SHOW_JWS2_SERVICES user...	blob \| commitdiff \| diff to current
2022-03-04	Jim Procter	JAL-3746 JAL-3813 NOIDENTIFIERSSERVICE preference disab...	blob \| commitdiff \| diff to current
2022-02-16	Jim Procter	JAL-3837 GPL license on splashscreen (finally !) and...	blob \| commitdiff \| diff to current
2022-02-11	Jim Procter	JAL-3949 - refactor logging from jalview.bin.Cache...	blob \| commitdiff \| diff to current
2022-02-11	Ben Soares	JAL-3949 Complete new abstracted logging framework...	blob \| commitdiff \| diff to current
2021-11-03	Jim Procter	JAL-3915 remove RNAview opts from preferences. Still...	blob \| commitdiff \| diff to current
2021-09-21	Ben Soares	JAL-3691 automatic insertion of Locale.ROOT to toUpperC...	blob \| commitdiff \| diff to current
2021-09-15	Jim Procter	JAL-3746 fix bad merge from 2.11.1.4/5 branch cherrypick	blob \| commitdiff \| diff to current
2021-09-15	Jim Procter	JAL-3741 http to https (and jar to jvp for exampleFile...	blob \| commitdiff \| diff to current
2021-09-14	Ben Soares	JAL-3521 Change grouped Jalview windows on linux taskba...	blob \| commitdiff \| diff to current
2021-02-10	Ben Soares	JAL-3251 On linux set (sun.awt.X11.XToolkit.)awtAppClas...	blob \| commitdiff \| diff to current
2021-02-10	Ben Soares	JAL-3521 Change grouped Jalview windows on linux taskba...	blob \| commitdiff \| diff to current
2021-02-05	Jim Procter	JAL-3813 NOIDENTIFIERSSERVICE preference disables jalvi...	blob \| commitdiff \| diff to current
2021-02-05	Jim Procter	JAL-3811 document SHOW_JWS2_SERVICES user preference...	blob \| commitdiff \| diff to current
2021-01-21	gmungoc	JAL-3038 corrected code that reads editable JComboBox...	blob \| commitdiff \| diff to current
2020-12-09	Ben Soares	JAL-3594 Images for splash screen	blob \| commitdiff \| diff to current
2020-12-09	Ben Soares	JAL-3594 JAL-3728 Added taskbar icons to desktop and...	blob \| commitdiff \| diff to current
2020-12-08	Ben Soares	Merge branch 'merge/develop_and_rebase_squashed_merge_J...	blob \| commitdiff \| diff to current
2020-12-08	Ben Soares	JAL-3594 Change main window title	blob \| commitdiff \| diff to current
2020-12-01	Ben Soares	JAL-3609 JAL-3775 Tests for jalview.bin.HiDPISetting	blob \| commitdiff \| diff to current
2020-11-13	Ben Soares	JAL-3775 Eclipse re-formatting commit	blob \| commitdiff \| diff to current
2020-11-13	Ben Soares	JAL-3275 JAL-3633: JAL-3275 Turned Preferences into...	blob \| commitdiff \| diff to current
2020-09-17	Jim Procter	JAL-3741 http to https (and jar to jvp for exampleFile...	blob \| commitdiff \| diff to current
2020-05-29	gmungoc	JAL-2422 test updated	blob \| commitdiff \| diff to current
2020-04-16	BobHanson	JAL-3587 Load Project bug	blob \| commitdiff \| diff to current
2020-04-07	soares	merge from develop: Most of the changes	blob \| commitdiff \| diff to current
2020-04-06	Jim Procter	JAL-3407 redact java 8 incompatible type inference	blob \| commitdiff \| diff to current
2020-03-30	gmungoc	JAL-3210 debug logging commented out	blob \| commitdiff \| diff to current
2020-03-30	gmungoc	Merge branch 'develop' into Jalview-JS/develop	blob \| commitdiff \| diff to current
2020-02-19	Jim Procter	JAL-3187 JAL-2764 close feature settings when parent...	blob \| commitdiff \| diff to current
2020-02-18	Jim Procter	JAl-3187 JAL-3535 JAL-3534 update open feature settings...	blob \| commitdiff \| diff to current
2020-02-17	Jim Procter	JAL-3534 patch for simple case (Protein or Nucleotide...	blob \| commitdiff \| diff to current
2019-11-12	gmungoc	JAL-3274 resource path correction, code tidying (consta...	blob \| commitdiff \| diff to current
2019-11-05	gmungoc	JAL-3210 reverted (ignore previous commit)	blob \| commitdiff \| diff to current
2019-11-05	gmungoc	JAL-3120 JAL-3130 can't read "java.specification.versio...	blob \| commitdiff \| diff to current
2019-07-16	gmungoc	JAL-3210 Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2019-06-17	Jim Procter	JAL-3311 remove menus and documentation relating to... tasks/JAL-3311_removeVamsasMenu	blob \| commitdiff \| diff to current
2019-06-14	Jim Procter	JAL-3111 report build type and commit in stdout from...	blob \| commitdiff \| diff to current
2019-05-27	Ben Soares	Merge branch 'task/JAL-3247_JAL-3246_JAL-3254_JAL-3236_...	blob \| commitdiff \| diff to current
2019-05-24	Ben Soares	JAL-3141 Reworked a lot of BackupFiles to allow the...	blob \| commitdiff \| diff to current
2019-05-22	Ben Soares	Merge branch 'bug/JAL-3141_backupfiles_prefs_widget_dis...	blob \| commitdiff \| diff to current
2019-05-21	Ben Soares	JAL-3247 Launcher start improvements. RPM and DEB no...	blob \| commitdiff \| diff to current
2019-04-16	hansonr	caching of DnD files dropped	blob \| commitdiff \| diff to current
2019-04-15	Ben Soares	JAL-3130 Helper classes to take Class Exceptions when...	blob \| commitdiff \| diff to current
2019-04-05	Ben Soares	JAL-3130 This commit concentrates on the Mac OS X DMG...	blob \| commitdiff \| diff to current
2019-04-04	Ben Soares	JAL-3130 trying to be Java 1.8 source compatible -...	blob \| commitdiff \| diff to current
2019-04-03	hansonr	replacing @j2sNative with @j2sIgnore where appropriate...	blob \| commitdiff \| diff to current
2019-04-03	hansonr	j2sNative clean-up. Fixes problem with second try of...	blob \| commitdiff \| diff to current
2019-03-27	hansonr	isJS cleanup	blob \| commitdiff \| diff to current
2019-03-20	Ben Soares	JAL-3130 Lots of deprecation fixes. See utils/deprecat...	blob \| commitdiff \| diff to current
2019-03-20	Ben Soares	JAL-3141 Disabled the 'Include Backup Files' checkbox...	blob \| commitdiff \| diff to current
2019-03-19	Ben Soares	JAL-3130 remove some comments on quit. fix modules...	blob \| commitdiff \| diff to current
2019-03-19	Ben Soares	JAL-3130 Merge of JAL-3130_Java_11_investigations-Ben...	blob \| commitdiff \| diff to current
2019-03-14	gmungoc	JAL-3210 JAL-3141 JAL-3056 disable backups in JalviewJS	blob \| commitdiff \| diff to current
2019-03-13	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2019-01-30	Ben Soares	JAL-3141 Enabled the 'Include backpup files' checkbox...	blob \| commitdiff \| diff to current
2019-01-29	hansonr	more iterators out; some time checks	blob \| commitdiff \| diff to current
2019-01-26	hansonr	Jalview.isJS() --> Platform.isJS(), DBRefEntry[] -...	blob \| commitdiff \| diff to current
2019-01-25	Ben Soares	JAL-3141. This adds quite a lot of code to allow an...	blob \| commitdiff \| diff to current
2019-01-24	hansonr	adds File..Load Project file for JS	blob \| commitdiff \| diff to current
2019-01-24	Ben Soares	JAL-3141 Reformatted code in eclipse	blob \| commitdiff \| diff to current
2019-01-21	hansonr	isAMac() -> isAMacAndNotJS(), isWindows() -> isWindowsA...	blob \| commitdiff \| diff to current
2019-01-21	hansonr	menu update; popup not functioning, though?? Working...	blob \| commitdiff \| diff to current
2019-01-20	Ben Soares	JAL-3141 Changed suffix position to after the extension...	blob \| commitdiff \| diff to current
2019-01-18	Jim Procter	Merge branch 'feature/JAL-3063jaxbNoCastor' into featur...	blob \| commitdiff \| diff to current
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