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Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git] / src / jalview / gui / StructureViewerBase.java
2023-11-03 James ProcterJAL-4090 JAL-1551 spotlessApply commit | commitdiff
2023-10-20 James ProcterJAL-4307 also report molecule name in tooltip for show... feature/JAL-4307_hetatm_showhide commit | commitdiff
2023-10-19 James ProcterJAL-4307 View->Ligands submenu, implementation for... commit | commitdiff
2023-09-05 James ProcterJAL-629 remove structure viewer from the list of struct... commit | commitdiff
2023-09-05 James ProcterJAL-629 use JalviewStructureDisplayI in place of Struct... commit | commitdiff
2023-09-01 Ben SoaresJAL-629 Save structure frames in project files when... commit | commitdiff
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use... commit | commitdiff
2023-02-13 Ben SoaresJAL-4125 Move confirmation of closing external viewer... commit | commitdiff
2023-02-09 Ben SoaresJAL-4125 Additions to JvOptionPane and QuitHandler... commit | commitdiff
2022-11-09 Ben SoaresMerge branch 'improvement/JAL-3416_default_to_LIVE_DRAG... commit | commitdiff
2022-11-09 Ben SoaresJAL-3416 Remove all JFrame/JInternalFrame icons (set... commit | commitdiff
2022-11-04 Ben SoaresJAL-1998 JAL-3772 JAL-3416 Merge conflict resolution... commit | commitdiff
2022-11-03 Ben SoaresJAL-1988 JAL-3772 Allow other window closing dialogs... commit | commitdiff
2022-11-03 Ben SoaresJAL-3416 More JInternalFrame icons commit | commitdiff
2022-03-08 Ben SoaresJAL-3103 Put jalview.jar first in getdown for .properti... commit | commitdiff
2022-02-11 Jim ProcterMerge branch 'update/JAL-3949_jalview_bin_Console_to_cu... commit | commitdiff
2022-02-11 Jim ProcterJAL-3931 fix - escape % symbols after urlencoding commit | commitdiff
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache... commit | commitdiff
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework... commit | commitdiff
2021-12-13 Jim ProcterJAL-3855 JAL-3829 don’t need to make up alphafold model... commit | commitdiff
2021-12-08 Jim ProcterJAL-3929 URLencode pdbid to remove problematic characte... commit | commitdiff
2021-11-08 Jim ProcterJAL-3921 wait around until session file has been written commit | commitdiff
2021-10-18 Jim ProcterJAL-3904 override buildActionMenu to add in additional... commit | commitdiff
2021-10-18 Jim ProcterJAL-3904 failing test commit | commitdiff
2021-09-14 Jim ProcterJAL-3855 JAL-3829 better checks on PDB or mmCIF file... commit | commitdiff
2021-09-14 Jim ProcterJAL-3829 JAL-3855 moved routing for retrieving structur... commit | commitdiff
2021-07-27 Jim ProcterJAL-3855 check if an alpha fold ID and retrieve using... commit | commitdiff
2020-06-29 gmungocJAL-3518 corrected action on pulled up closeViewer() commit | commitdiff
2020-05-29 gmungocJAL-3551 null pointer defence while structure files... feature/JAL-3551Pymol commit | commitdiff
2020-05-21 gmungocJAL-3551 copy Jalview features to Pymol 'p' (with pull... commit | commitdiff
2020-05-19 gmungocMerge branch 'develop' into feature/JAL-3551Pymol commit | commitdiff
2020-05-15 gmungocJAL-3551 pull up Close Viewer dialog to base class commit | commitdiff
2020-05-11 gmungocJAL-2422 JAL-3551 viewer text/variables generalised... commit | commitdiff
2020-04-30 gmungocJAL-3551 save structure viewer session refactorings... commit | commitdiff
2020-03-13 gmungocJAL-3551 working proof of concept of Jalview driving... commit | commitdiff
2020-02-28 gmungocJAL-3518 basic refactoring / pull up of superposeStruct... commit | commitdiff
2020-02-21 gmungocJAL-2422 tidy of methods and parameters commit | commitdiff
2020-02-20 gmungocJAL-2422 pull-up refactoring of structure commands... commit | commitdiff
2020-02-04 gmungocJAL-2422 fixed stopProgressBar (broken in pull up refac... commit | commitdiff
2020-02-04 gmungocJAL-2422 pull up refactoring in preparation for Chimera... commit | commitdiff
2019-03-13 gmungocMerge branch 'develop' into trialMerge commit | commitdiff
2018-10-09 Jim ProcterJAL-3127 pass reference to AlignViewportI when creating... commit | commitdiff
2018-07-05 gmungocJAL-3058 missed refactoring of JColorChooser commit | commitdiff
2018-07-05 gmungocJAL-3058 refactored raising JColorChooser for JS compat... commit | commitdiff
2018-06-28 Jim ProcterJAL-3048 TODOs for refactoring JalviewFileChooser pattern commit | commitdiff
2018-05-07 Jim ProcterJAL-2960 don’t override a swing method and create infin... commit | commitdiff
2018-05-04 Jim ProcterJAL-2960 raise the structure view after adding structur... commit | commitdiff
2018-04-12 gmungocJAL-2944 tidies for review comments commit | commitdiff
2018-04-09 Jim ProcterJAL-1847 JAL-2944 make superposition step a configurabl... commit | commitdiff
2018-04-05 Jim ProcterJAL-2944 get viewer’s title via toString() commit | commitdiff
2018-04-05 Jim ProcterJAL-2944 expose UI update methods in api commit | commitdiff
2018-04-05 Jim ProcterJAL-2944 remove modal prompt logic and expose methods... commit | commitdiff
2018-04-05 Jim ProcterJAL-2944 pull up structure viewer discovery routine... commit | commitdiff
2018-02-07 Jim ProcterJAL-2902 catch case where viewer is closed (therefore... commit | commitdiff
2018-02-07 Jim ProcterJAL-2902 - isBusy and hasMapping methods so client... commit | commitdiff
2017-10-27 gmungocJAL-1793 spike branch updated to latest commit | commitdiff
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2392_deadlockonpdbdisplay' into... commit | commitdiff
2017-10-24 gmungocJAL-2738 update spike branch with latest commit | commitdiff
2017-10-12 Jim ProcterJAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview commit | commitdiff
2017-10-10 Jim ProcterMerge branch 'codereviews/JAL-1990_IProgressIndicator_j... commit | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo commit | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting commit | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch commit | commitdiff
2017-05-29 Jim ProcterMerge branch 'features/JAL-2465_No-mapping_Jmol-structu... commit | commitdiff
2017-05-01 tcofoegbuJAL-2465 bugfix and rerefactor renamed getPdbFile(... commit | commitdiff
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection... commit | commitdiff
2017-03-07 gmungocJAL-2295 status messages for Chimera attributes set... commit | commitdiff
2017-03-02 gmungocJAL-2295 tweak order and wording of Superpose menu... commit | commitdiff
2017-03-02 gmungocJAL-2295 make 'Jmol' menu appear; enable/disable Superp... commit | commitdiff
2016-12-22 gmungocJAL-2360 structure viewers now using ColourMenuHelper... commit | commitdiff
2016-12-08 gmungocJAL-2358 ensure mappings removed on close Chimera;... bug/JAL-2358phantomChimera commit | commitdiff
2016-11-28 gmungocMerge branch 'develop' into trialMerge commit | commitdiff
2016-11-25 gmungocMerge branch 'develop' into trialMerge commit | commitdiff
2016-11-24 tcofoegbuJAL-2326 updated references of JOptionPane to JvOptionPane commit | commitdiff
2016-11-10 tcofoegbuBugfix to enable accurate chain extraction/association... commit | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch commit | commitdiff
2016-07-11 gmungocfile format enum wip changes commit | commitdiff
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 commit | commitdiff
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 licencing for new files in src commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports commit | commitdiff
2015-08-19 gmungocJAL-1742 suppress 'add chain' option for Jmol, pull... commit | commitdiff
2015-06-10 gmungocJAL-1764 save Chimera/Jmol state as separate entries... commit | commitdiff
2015-01-08 gmungocJAL-1588 part work save/restore of Chimera session commit | commitdiff
2015-01-07 gmungocJAL-1588 refactoring to StructureViewerBase and related commit | commitdiff