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Merge branch 'develop' into spike/JAL-4047/JAL-4048_columns_in_sequenceID
[jalview.git] / src / jalview / gui /
2023-09-14 James ProcterMerge branch 'develop' into spike/JAL-4047/JAL-4048_col... spike/JAL-4047/JAL-4048_columns_in_sequenceID tree | commitdiff
2023-09-07 James ProcterJAL-4090 JAL-4160 JAL-4274 image export dimensions... tree | commitdiff
2023-09-07 James ProcterJAL-4273 release notes for visible adjuster marks,... tree | commitdiff
2023-09-06 James ProcterJAL-4260 attempt to rejig paging when id width is adjus... tree | commitdiff
2023-09-06 James ProcterJAL-4258 remove unnecessary ‘this’ tree | commitdiff
2023-09-06 James ProcterJAL-4259 construct a new SequenceRenderer when renderin... tree | commitdiff
2023-09-06 James ProcterJAL-629 reinstate INFO level stack trace from Structure... tree | commitdiff
2023-09-05 James ProcterJAL-629 remove structure viewer from the list of struct... tree | commitdiff
2023-09-05 James ProcterJAL-629 use JalviewStructureDisplayI in place of Struct... tree | commitdiff
2023-09-01 Ben SoaresMerge branch 'feature/JAL-629_--output_-_means_output_t... tree | commitdiff
2023-09-01 Ben SoaresJAL-629 Save structure frames in project files when... tree | commitdiff
2023-09-01 Ben SoaresMerge branch 'feature/JAL-629_--output_-_means_output_t... tree | commitdiff
2023-09-01 Ben SoaresJAL-629 Fix --structureimage and options tree | commitdiff
2023-08-31 Ben SoaresMerge branch 'develop' into features/r2_11_2_alphafold... tree | commitdiff
2023-08-28 Ben SoaresMerge branch 'develop' into merge/big_merge_of_bens_stu... tree | commitdiff
2023-08-28 James ProcterJAL-4253 drop the bottom line so it lines up with the... tree | commitdiff
2023-08-24 Ben SoaresMerge branch 'develop' into merge/big_merge_of_bens_stu... tree | commitdiff
2023-08-24 Ben SoaresMerge branch 'features/r2_11_2_alphafold/JAL-629' into... tree | commitdiff
2023-08-24 Ben SoaresJAL-629 Avoid hidden options dialog when saving in... tree | commitdiff
2023-08-24 Ben SoaresMerge branch 'bug/JAL-4214_system_freeze_when_opening_f... tree | commitdiff
2023-08-23 Ben SoaresMerge branch 'improvement/JAL-4250_secondary_structure_... tree | commitdiff
2023-08-23 Ben SoaresJAL-4250 Simplification of polygons and adjustments... tree | commitdiff
2023-08-18 Ben SoaresMerge branch 'improvement/JAL-4206_improve_JalviewFileC... tree | commitdiff
2023-08-18 Ben SoaresMerge branch 'bug/JAL-4214_system_freeze_when_opening_f... tree | commitdiff
2023-08-18 Ben SoaresMerge branch 'feature/JAL-244_Automatically_adjust_left... tree | commitdiff
2023-08-18 Ben SoaresMerge branch 'improvement/JAL-3830_remove_dock_icon_in_... tree | commitdiff
2023-08-18 Ben SoaresJAL-4242 null check on getValue() return bug/JAL-4242_exception_when_pressing_escape_in_fetch_from_URL_dialog tree | commitdiff
2023-08-11 Ben SoaresJAL-629 Much better way of dealing with list of filenam... tree | commitdiff
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use... tree | commitdiff
2023-08-09 Ben SoaresJAL-629 Enable output to STDOUT when specifying output... tree | commitdiff
2023-08-09 Ben SoaresJAL-244 Fix window size narrow adjustment not becoming... feature/JAL-244_Automatically_adjust_left_margin_to_avoid_cropping_annotation_labels tree | commitdiff
2023-08-08 Ben SoaresJAL-244 Added light grey marks to indicate regions... tree | commitdiff
2023-08-08 Ben SoaresJAL-244 Fix mismatched vertical positioning of sequence... tree | commitdiff
2023-08-07 Ben SoaresJAL-244 Avoid working on the Ids Graphics object when... tree | commitdiff
2023-08-04 Ben SoaresJAL-244 Adjust wrapped alignment widths to always maint... tree | commitdiff
2023-08-02 Ben SoaresJAL-244 Fix buglet with automatic change in id column... tree | commitdiff
2023-08-01 Ben SoaresJAL-244 More control of automatic idWidth adjustments... tree | commitdiff
2023-07-27 Ben SoaresMerge branch 'develop' into feature/JAL-244_Automatical... tree | commitdiff
2023-07-27 Ben SoaresJAL-244 Allow wrap manual adjustments to be smaller... tree | commitdiff
2023-07-27 Ben SoaresJAL-244 Allow adjusting Id column width in wrap mode... tree | commitdiff
2023-07-25 Ben SoaresJAL-244 testing without AlignFrame for --wrap tree | commitdiff
2023-07-21 Ben SoaresJAL-244 Fixed idWidth labels in headless mode for non... tree | commitdiff
2023-07-20 Ben SoaresJAL-244 More accurate width calculation, allow increase... tree | commitdiff
2023-07-20 James ProcterJAL-3855 tree title for PAE matrix tree is PAE Matrix... patch/JAL-3855_fixup_pae tree | commitdiff
2023-07-20 James ProcterJAL-3855 auto select clusters and fix up colouring... tree | commitdiff
2023-07-19 Ben SoaresJAL-244 Changes to Annotation labels width now adjusts... tree | commitdiff
2023-07-18 James ProcterJAL-3858 fix off-by-one in matrix visualisation and... tree | commitdiff
2023-07-18 James ProcterJAL-3858 flip diagonal so matrix visualisation is top... tree | commitdiff
2023-07-06 James ProcterJAL-629 make —structure image work again after threadin... tree | commitdiff
2023-07-06 James ProcterJAL-4217 catch case when the structure viewer doesn... tree | commitdiff
2023-07-06 James ProcterJAL-4217 wrap imageExport CLI method's call to imageExp... tree | commitdiff
2023-07-06 James ProcterJAL-4217 wrap imageExport CLI method's call to imageExp... tree | commitdiff
2023-07-05 James ProcterMerge branch 'patch/JAL-4213_addref_with_selection... tree | commitdiff
2023-06-30 James ProcterJAL-4217 try really hard to shut down and dispose of... tree | commitdiff
2023-06-29 Ben SoaresJAL-4214 Linux only: Disable menus when internal modal... bug/JAL-4214_system_freeze_when_opening_file_using_gui_in_linux tree | commitdiff
2023-06-28 Ben SoaresJAL-4214 Make modal internal frame disappear when main... tree | commitdiff
2023-06-28 Ben SoaresJAL-4214 Close modal internal frame if JRootPane activi... tree | commitdiff
2023-06-26 Ben SoaresMerge branch 'develop' into improvement/JAL-4206_improv... improvement/JAL-4206_improve_JalviewFileChooser_for_flatlaf tree | commitdiff
2023-06-22 James ProcterJAL-4213 don’t pass active selection when actioning... patch/JAL-4213_addref_with_selection tree | commitdiff
2023-06-21 James ProcterMerge branch 'patch/JAL-4196_structure_viewer_synchroni... patch/JAL-4196_structure_viewer_synchronising tree | commitdiff
2023-06-15 Ben SoaresJAL-4206 Use All Known Alignment Files as default until... tree | commitdiff
2023-06-14 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl... tree | commitdiff
2023-06-13 Ben SoaresJAL-3416 Removed a few more JInternalFrame icons with... tree | commitdiff
2023-06-09 Ben SoaresJAL-3599 Make jalviewjs dependOn jalviewjsLaunchTest... tree | commitdiff
2023-06-09 Ben SoaresJAL-3599 Deliberate NPE to see if build plan fails tree | commitdiff
2023-06-08 Ben SoaresJAL-3599 gradle tasks to test JalviewJS launches in... tree | commitdiff
2023-06-08 James ProcterJAL-4196 structure view cli tests wait using new jalvie... tree | commitdiff
2023-06-08 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl... tree | commitdiff
2023-06-07 James ProcterJAL-4195 add exception handling for all image output... tree | commitdiff
2023-06-07 James ProcterMerge branch 'patch/JAL-4195_cli_eps_export_npe' into... tree | commitdiff
2023-06-07 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl... tree | commitdiff
2023-06-07 Ben SoaresJAL-4001 GA4 tracking is now ENABLED. Currently loggin... tree | commitdiff
2023-06-07 James ProcterJAL-4195 tidy up desktop instances after creating them tree | commitdiff
2023-06-06 James ProcterJAL-4195 report full stack trace for exceptions raised... tree | commitdiff
2023-06-01 Ben SoaresMerge branch 'develop' into improvement/JAL-4193_cl_arg... tree | commitdiff
2023-06-01 Ben SoaresJAL-4193 JAL-4194 sessionProperties layer in Cache... tree | commitdiff
2023-06-01 James ProcterJAL-4134 properly resolve positions in associated align... features/JAL-4134_use_annotation_row_for_colours_and_groups tree | commitdiff
2023-05-30 James ProcterJAL-4134 repaint the tree or alignment view(s) when... tree | commitdiff
2023-05-30 James ProcterJAL-4134 highlight selected column nodes on the linked... tree | commitdiff
2023-05-29 James ProcterJAL-4190 - escape clears selected nodes tree | commitdiff
2023-05-29 James ProcterMerge branch 'develop' into features/JAL-4134_use_annot... tree | commitdiff
2023-05-26 Ben SoaresJAL-4125 Fixed non-closing external viewers, also added... tree | commitdiff
2023-05-26 James ProcterJAL-4134 internationalise popup menu entries and show... tree | commitdiff
2023-05-26 James ProcterJAL-1556 fix bad import tree | commitdiff
2023-05-26 James ProcterMerge branch 'develop' into features/JAL-4134_use_annot... tree | commitdiff
2023-05-26 James ProcterJAL-1556 initial implementation - no tests as yet but... tree | commitdiff
2023-05-26 Ben SoaresJAL-629 dispose of non-displaying StructureChooser... tree | commitdiff
2023-05-26 Ben SoaresMerge branch 'develop' into feature/JAL-3416_update_to_... feature/JAL-3416_update_to_flatlaf_3.1.1_with_unpacked_native_libraries tree | commitdiff
2023-05-25 James ProcterJAL-4134 popup menu and annotation row property to... tree | commitdiff
2023-05-25 James ProcterJAL-2381 copy and paste sequence also copies contact... tree | commitdiff
2023-05-25 Ben SoaresJAL-3820 Create and use 'Jalview app' symblinks to... tree | commitdiff
2023-05-25 Ben SoaresJAL-4186 Turn JvOptionPane Callable<Void> handlers... tree | commitdiff
2023-05-24 Ben SoaresJAL-4186 attempts to work in jalviewjs, still not working tree | commitdiff
2023-05-24 Ben SoaresJAL-4186 fix dialog. broken in JalviewJS tree | commitdiff
2023-05-23 Ben SoaresJAL-629 Added --structureimage code and formatting... tree | commitdiff
2023-05-22 Ben SoaresJAL-629 --structureimage with formatting args. tree | commitdiff
2023-05-22 James ProcterJAL-4134 map between column and node selections better... tree | commitdiff
2023-05-22 James ProcterJAL-4134 efficiency improvement tree | commitdiff
2023-05-22 James ProcterJAL-4134 only build tree when showing it in the tree... tree | commitdiff
2023-05-22 James ProcterJAL-1551 spotless tree | commitdiff
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