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JAL-2629 hmmer searches now read domain rather than full scores
[jalview.git] / src / jalview / hmmer / HMMSearch.java
2019-07-12 ThomasJAL-2629 hmmer searches now read domain rather than... blob | commitdiff
2019-07-11 ThomasJAL-2629 hmm search UI and structural improvements... blob | commitdiff | diff to current
2019-07-10 tvaJAL-2629 fix hmmsearch/jackhmmer assigning incorrect... blob | commitdiff | diff to current
2019-07-10 tvaJAL-2629 fix hmsearch and jackhmmer not being able... blob | commitdiff | diff to current
2019-07-10 tvaJAL-2629 hmmsearch # of new sequences now only displaye... blob | commitdiff | diff to current
2019-07-10 tvaJAL-2629 fix hmmsearch/jackhmmer being unable to search... blob | commitdiff | diff to current
2019-07-05 tvaJAL-2629 uniquify all hmmer command sequence outputs blob | commitdiff | diff to current
2019-07-05 tvaJAL-2629 fix file format issues preventing hmmsearch... blob | commitdiff | diff to current
2019-07-03 tvaJAL-2629 fix hmm on alignment being deleted upon runnin... blob | commitdiff | diff to current
2019-07-03 tvaJAL-2629 can now filter by sequence e-value or bit... blob | commitdiff | diff to current
2019-07-02 tvaJAL-2629 add simple jackhmmer functionality blob | commitdiff | diff to current
2019-06-28 tvaJAL-3336 add better method of determining where data... blob | commitdiff | diff to current
2019-06-28 tvaJAL-3336 fix hmmsearch failing when parsing score table blob | commitdiff | diff to current
2019-06-06 tvaJAL-3285 fix incorrect file paths on HMMAlign/Search... blob | commitdiff | diff to current
2018-05-31 Jim ProcterJAL-1950 JAL-2629 insert gaps into HMM used to search... blob | commitdiff | diff to current
2018-05-31 Jim ProcterJAL-2629 (probably not right issue) JAL-1950 - make... blob | commitdiff | diff to current
2018-05-31 Jim ProcterJAL-3011 JAL-2719 JAL-1958 add posterior probability... blob | commitdiff | diff to current
2018-05-30 gmungocJAL-3005 JAL-2629 file chooser argument for HMM search... blob | commitdiff | diff to current
2018-05-22 gmungocJAL-2629 method refactor and menu tidying blob | commitdiff | diff to current
2018-05-15 gmungocJAL-2719 parse bit score annotation from search results blob | commitdiff | diff to current
2018-05-15 gmungocJAL-2629 JAL-2937 respect 'align automatically' option... blob | commitdiff | diff to current
2018-05-09 gmungocJAL-2714 HMMSearch cutoff by E-Value, Score or None blob | commitdiff | diff to current
2018-04-18 gmungocJAL-2629 corrected cutoff parameter passing to hmmsearch blob | commitdiff | diff to current
2018-04-17 gmungocMerge branch 'features/mchmmer' of https://source.jalvi... blob | commitdiff | diff to current
2018-04-17 gmungocJAL-2629 choice of hmm profile now a parameter not... blob | commitdiff | diff to current
2018-04-17 Mungo CarstairsJAL-2937 working Cygwin bash execution of hmmbuild... blob | commitdiff | diff to current
2018-04-09 Mungo CarstairsJAL-2937 Cygwin path preference, method refactoring blob | commitdiff | diff to current
2018-03-23 gmungocJAL-2629 pad gaps when exporting alignment as 'database... blob | commitdiff | diff to current
2018-03-07 gmungocJAL-2629 storage and lifecycle of alignment/group HMM... blob | commitdiff | diff to current