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Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git] / src / jalview / io / FileLoader.java
2023-10-12 Ben SoaresJAL-3772 Fix the logic of prompt to save URL loaded... commit | commitdiff
2023-10-11 Ben SoaresJAL-3772 Preference to NOT prompt to save remotely... commit | commitdiff
2023-09-07 James ProcterJAL-4279 suppress error dialogs raised by file loader... improvement/JAL-4279_gracefully_handle_failure_to_openviaCLI commit | commitdiff
2023-08-18 Ben SoaresMerge branch 'improvement/JAL-4206_improve_JalviewFileC... commit | commitdiff
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use... commit | commitdiff
2023-06-15 Ben SoaresJAL-4206 Use All Known Alignment Files as default until... commit | commitdiff
2023-04-19 Ben SoaresJAL-629 Now showing temp fac and secondary structure... commit | commitdiff
2023-03-24 Ben SoaresJAL-629 Test tidyup commit | commitdiff
2023-03-23 Ben SoaresJAL-629 refactor ArgParser and helper classes all to... commit | commitdiff
2023-03-15 Ben SoaresJAL-629 Commands more objecty, less classy. FileLoader... commit | commitdiff
2023-02-22 Ben SoaresMerge branch 'develop' into features/r2_11_2_alphafold... commit | commitdiff
2023-02-20 Ben SoaresMerge branch 'develop' into bug/JAL-4125_flatlaf_quitha... bug/JAL-4125_flatlaf_quithandler_warning_doesnt_display_properly commit | commitdiff
2023-02-16 James ProcterMerge branch 'features/r2_11_2_alphafold/JAL-629' into... commit | commitdiff
2023-01-31 James ProcterJAL-1713 update from Jalview 2.11.3 develop commit | commitdiff
2023-01-30 Ben SoaresJAL-1988 Make sensible choices if only the opening... merge/JAL-1988_JAL-3772+JAL-3416+JAL-4054+JAL-4064 commit | commitdiff
2023-01-11 Ben SoaresJAL-629 refactoring TFType. Remove i18n identification... commit | commitdiff
2022-12-05 Ben SoaresJAL-629 implementation of --tempfac options commit | commitdiff
2022-11-01 Ben SoaresJAL-1988 JAL-3772 Change default alignmentviewport... commit | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 commit | commitdiff
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework... commit | commitdiff
2022-02-07 Jim ProcterMerge branch 'feature/JAL-1713_overviewInProject' into... commit | commitdiff
2022-02-07 Jim ProcterJAL-3785 JAL- Merge branch 'bug/JAL-3785autoOverviewTit... bug/JAL-3785autoOverviewTitle commit | commitdiff
2021-09-02 gmungocJAL-3509 JAL-1842 minor tidying of code commit | commitdiff
2020-12-12 gmungocJAL-1713 JAL-3119 JAL-3785 refactored get/set Overview... commit | commitdiff
2020-12-11 gmungocJAL-3785 set full title on automatically opened Overvie... commit | commitdiff
2020-04-21 gmungocJAL-3603 load annotation file from RELATIVE_URL in... commit | commitdiff
2020-02-06 gmungocJAL-3509 JAL-1842 minor tidying of code commit | commitdiff
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge commit | commitdiff
2019-04-18 hansonrexplicit Hashtable objects commit | commitdiff
2019-04-17 gmungocJAL-3026 fix bug loading Jalview Project (in Java) commit | commitdiff
2019-03-27 hansonrconsolidation of Platform isJS calls commit | commitdiff
2019-03-19 Ben SoaresJAL-3130 Merge of JAL-3130_Java_11_investigations-Ben... commit | commitdiff
2019-03-01 gmungocMerge branch 'feature/JAL-3093wrappedModeTooltips'... commit | commitdiff
2018-12-13 Ben SoaresJAL-3130 Attempting to fix 8 tests that pass on a Mac... commit | commitdiff
2018-12-06 Ben SoaresJAL-3130 incorporating feature/JAL-3063jaxbNoCastor... commit | commitdiff
2018-11-06 hansonrJAXB marshalling by JavaScript successfully unmarshalle... commit | commitdiff
2018-11-02 hansonrMarshalling produces valid ZIP file. Unmarshalling... commit | commitdiff
2018-10-17 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into Jalview-BH... commit | commitdiff
2018-10-04 gmungocJAL-3132 set status message when over sequence id or... commit | commitdiff
2018-09-19 gmungocJAL-3063 use JAXB for 'Save as Project' and load projec... commit | commitdiff
2018-08-27 hansonrJAL-3026 alignmentFrame.statusBar.setText -> .setStatus commit | commitdiff
2018-08-24 hansonrJAL-3026 GD#107,128,130,139 build-site.xml commit | commitdiff
2018-07-02 hansonrJAL-3026 File...Reload working commit | commitdiff
2018-06-28 hansonrJAL-3032 DND enabled; additional io changes for File... commit | commitdiff
2018-06-27 hansonrJAL-3032 part2 local file reading by JFileChooser commit | commitdiff
2018-06-20 gmungocJAL-3032 simplified _LoadFileWaitTillLoaded with no... commit | commitdiff
2018-06-20 hansonrJAL-3032 FileLoader fixes for SwingJS commit | commitdiff
2017-10-27 gmungocJAL-1793 spike branch updated to latest commit | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo commit | commitdiff
2017-09-01 gmungocJAL-2488 remove finalize methods commit | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting commit | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch commit | commitdiff
2017-05-29 Jim ProcterMerge branch 'features/JAL-2465_No-mapping_Jmol-structu... commit | commitdiff
2017-05-26 tcofoegbuJAL-2465 Improvement to re-instate storing recently... commit | commitdiff
2017-05-26 tcofoegbuJAL-2465 fix to prevent files loaded from the system... commit | commitdiff
2017-05-15 tcofoegbuJAL-2520 improvement to use URL leaf name for creating... commit | commitdiff
2017-05-09 tcofoegbuJAL-2520 improvement to download and update structure... commit | commitdiff
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection... commit | commitdiff
2017-01-11 gmungocJAL-2344 separated AlignmentFileI into AlignmentFileRea... commit | commitdiff
2017-01-11 gmungocJAL-2344 FileFormats singleton for formats, FileFormatI... commit | commitdiff
2016-12-04 Jim ProcterJAL-2349 add dummy contact for both applet and application commit | commitdiff
2016-12-04 Jim ProcterJAL-2349 dummy contact matrix annotation row commit | commitdiff
2016-11-28 gmungocMerge branch 'develop' into trialMerge commit | commitdiff
2016-11-25 gmungocJAL-2344 use .equals() to compare FileFormatI objects commit | commitdiff
2016-11-24 tcofoegbuJAL-2326 updated references of JOptionPane to JvOptionPane commit | commitdiff
2016-11-24 gmungocFileFormatI further tweaks, clean compile commit | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch commit | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... commit | commitdiff
2016-07-12 gmungocFileFormat enum wip changes commit | commitdiff
2016-07-11 gmungocfile format enum wip changes commit | commitdiff
2016-03-23 tcofoegbuJAL-2009 added programmatic custom feature setting... commit | commitdiff
2015-12-22 gmungocJAL-653 set showSequenceFeatures=true on loading a... commit | commitdiff
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or... commit | commitdiff
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 commit | commitdiff
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright commit | commitdiff
2015-10-05 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch commit | commitdiff
2015-09-29 tcofoegbuJAL-1896 fixed NPE for RNA Helice without equivalent... commit | commitdiff
2015-09-28 tcofoegbuJAL-1896 revised implementation to construct a ColourSc... commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports commit | commitdiff
2015-09-02 gmungocJAL-1355 User error text externalised to message bundle commit | commitdiff
2015-08-21 tcofoegbuJAL-1443 bug fix for loading pasted alignments from... commit | commitdiff
2015-08-07 tcofoegbuJAL-1824 updated caching procedure for pdb entries... commit | commitdiff
2015-07-30 tcofoegbuJAL-1443 modified exception notifications commit | commitdiff
2015-07-21 tcofoegbuJAL-1443 bugfix to prevent loading of unidentifiable... commit | commitdiff
2015-07-08 gmungocJAL-1759 merge from develop commit | commitdiff
2015-07-02 tcofoegbuJAL-1443 data validation for empty content before loadi... commit | commitdiff
2015-06-30 tcofoegbuJAL-1641 round trip test/refactoring commit | commitdiff
2015-06-25 Jim ProcterJAL-1780 JAL-653 JAL-1892 brackets in wrong place broke... commit | commitdiff
2015-06-17 Jim ProcterMerge branch 'develop' into features/JAL-653_gffalignments features/JAL-653_gffalignments commit | commitdiff
2015-06-15 Jim ProcterJAL-1775 FileLoader javadoc commit | commitdiff
2015-06-15 Jim ProcterJAL-1775 fix regression from commit 70f9c4700f20a8fa57e... commit | commitdiff
2015-06-12 tcofoegbuJAL-1641 refactor commit | commitdiff
2015-06-05 tcofoegbuJAL-1760 JAL-1641 Serialisation of Hidden Seqs and... commit | commitdiff
2015-06-05 Jim ProcterJAL-653 JAL-966 TODO and avoid NPE when desktop instanc... commit | commitdiff
2015-05-20 tcofoegbuJAL-1541 minor code clean up, and added test for BioJsH... commit | commitdiff
2015-05-19 tcofoegbuJAL-1641 Further refactoring of JSON export option... commit | commitdiff
2015-05-11 tcofoegbuJAL-1641 cherry-picked changes into develop compatible... commit | commitdiff
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch commit | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... commit | commitdiff
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