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[jalview.git] / src / jalview / io / HMMFile.java

2020-05-18	Jim Procter	Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into...	blob \| commitdiff
2018-04-23	gmungoc	JAL-2956 save/restore HMMER profile to/from Jalview...	blob \| commitdiff \| diff to current
2018-03-30	gmungoc	JAL-2599 MapList from HMM nodes to consensus dataset...	blob \| commitdiff \| diff to current
2018-02-26	gmungoc	JAL-2599 test coverage and bug fixes for 'minimal file...	blob \| commitdiff \| diff to current
2018-02-23	gmungoc	JAL-2599 parser and datamodel use primitive double...	blob \| commitdiff \| diff to current
2018-02-22	gmungoc	JAL-2629 tidy tests, refactor hmmer node mapping slightly	blob \| commitdiff \| diff to current
2018-02-22	gmungoc	JAL-2629 tidy unit tests, constants etc	blob \| commitdiff \| diff to current
2017-09-01	TZVanaalten	JAL-2629 fix hmmbuild failing due to RF longer than... features/hmmer	blob \| commitdiff \| diff to current
2017-08-18	TZVanaalten	Merge branch 'develop' into features/hmmer	blob \| commitdiff \| diff to current
2017-08-18	TZVanaalten	JAL-2668 HMMFile export method moved to print method	blob \| commitdiff \| diff to current
2017-08-17	TZVanaalten	JAL-2599 move fillSymbol method to HMFile	blob \| commitdiff \| diff to current
2017-08-17	TZVanaalten	JAL-2599 some slight renaming of variables and methods	blob \| commitdiff \| diff to current
2017-08-17	TZVanaalten	JAL-2629 add documentation to previous work	blob \| commitdiff \| diff to current
2017-08-16	TZVanaalten	JAL-2629 add hmmbuild validation check which also gets...	blob \| commitdiff \| diff to current
2017-08-11	TZVanaalten	JAL-2599 HMMs can now be dropped onto the desktop	blob \| commitdiff \| diff to current
2017-08-10	tzvanaalten	JAL-2629 fix files permission issue on Mac	blob \| commitdiff \| diff to current
2017-08-08	TZVanaalten	JAL-2599 fix for index issue on node lookup	blob \| commitdiff \| diff to current
2017-08-07	TZVanaalten	JAL-2629 current hmmer commands are now executed in...	blob \| commitdiff \| diff to current
2017-08-02	TZVanaalten	JAL-2599 fix issue where parser exported map annotation...	blob \| commitdiff \| diff to current
2017-07-31	TZVanaalten	JAL-2629 add hmmalign command	blob \| commitdiff \| diff to current
2017-07-27	TZVanaalten	JAL-2629 implement hmmbuild	blob \| commitdiff \| diff to current
2017-07-24	tzvanaalten	JAL-2599 .hmm parser should now accept older .hmm files	blob \| commitdiff \| diff to current
2017-07-20	TZVanaalten	JAL-2599 add ability to process RNA HMMer files	blob \| commitdiff \| diff to current
2017-07-18	TZVanaalten	JAL-2599 complete documentation for HMM and HMMFile...	blob \| commitdiff \| diff to current
2017-07-18	TZVanaalten	JAL-2599 modified state transition probability storage	blob \| commitdiff \| diff to current
2017-06-29	TZVanaalten	transferred the storage position of the HMM to annotations	blob \| commitdiff \| diff to current
2017-06-22	TZVanaalten	fully integrate HMMER3 file format into Jalview	blob \| commitdiff \| diff to current
2017-06-20	TZVanaalten	restructure file exporter	blob \| commitdiff \| diff to current
2017-06-15	TZVanaalten	add HMMFile class to read and write HMM files	blob \| commitdiff \| diff to current

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