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Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git] / src / jalview / io / StructureFile.java
2023-11-03 James ProcterJAL-4090 JAL-1551 spotlessApply commit | commitdiff
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use... commit | commitdiff
2023-05-17 Ben SoaresJAL-629 Tidy up tests and replaced methods before merge... commit | commitdiff
2023-05-11 Ben SoaresJAL-629 Fix --tempfac. Hide non-working --notempfac... commit | commitdiff
2023-04-19 Ben SoaresJAL-629 Now showing temp fac and secondary structure... commit | commitdiff
2023-03-02 Ben SoaresJAL-629 Some refactoring to allow more flexible use... commit | commitdiff
2023-01-24 James ProcterJAL-629 need to delay call to AlignFile.parse() if... commit | commitdiff
2023-01-11 Ben SoaresJAL-629 refactoring TFType. Remove i18n identification... commit | commitdiff
2022-12-05 Ben SoaresJAL-629 implementation of --tempfac options commit | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 commit | commitdiff
2021-09-21 Jim ProcterJAL-3829 ignore the fake ID generated when a PDB format... commit | commitdiff
2018-11-14 gmungocJAL-3032 don't throw Exception to signal chain not... commit | commitdiff
2018-08-21 hansonrmc_view references were MCview commit | commitdiff
2018-06-28 hansonrJAL-3032 DND enabled; additional io changes for File... commit | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo commit | commitdiff
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList commit | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting commit | commitdiff
2017-06-14 gmungocJAL-2598 Sequence.getSequence return a copy of the... commit | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch commit | commitdiff
2017-05-29 Jim ProcterJAL-2533 update javadoc features/JAL-2465_No-mapping_Jmol-structures-loaded-via-url commit | commitdiff
2017-05-15 tcofoegbuJAL-2533 improvement to prune off file extension when... commit | commitdiff
2016-11-29 gmungocJAL-2344 FileFormat.isStructureFile replaces commit | commitdiff
2016-11-25 gmungocMerge branch 'develop' into trialMerge commit | commitdiff
2016-11-01 tcofoegbuJAL-2280 refactored and improved structure file identif... commit | commitdiff
2016-10-17 tcofoegbuJAL-2262 JAL-2195 Improvement to set PDBId availability... commit | commitdiff
2016-10-06 gmungocMerge branch 'develop' into task/JAL-2196pdbeProperties commit | commitdiff
2016-10-05 Jim ProcterJAL-2189 apply license commit | commitdiff
2016-10-05 Jim ProcterJAL-2189 source formatting commit | commitdiff
2016-10-05 gmungocMerge branch 'develop' into task/JAL-2196pdbeProperties commit | commitdiff
2016-09-16 gmungocJAL-2164 removed unused parameters from JmolParser... commit | commitdiff
2016-09-13 gmungocJAL-2196 refactor PDBEntry.getProperty,setProperty... commit | commitdiff
2016-09-07 Jim ProcterJAL-1803 JAL-1919 set type when structure file is parsed commit | commitdiff
2016-09-04 Jim ProcterJAL-2148 JAL-1803 JAL-1919 resolve type for mmCIF loade... commit | commitdiff
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum commit | commitdiff
2016-08-24 Jim ProcterJAL-2106 removed setSourceDBRef, refactor getSourceDBRe... commit | commitdiff
2016-07-21 Jim ProcterMerge branch 'apifix/JAL-1926_JAL-2106' into develop commit | commitdiff
2016-07-20 Jim ProcterJAL-1926 JAL-2106 fix name for flag controlling additio... commit | commitdiff
2016-07-20 Jim ProcterJAL-1926 JAL-2106 remove startRes/endRes fields - not... commit | commitdiff
2016-07-14 tcofoegbuJAL-1919 house-keeping commit | commitdiff
2016-07-11 gmungocfile format enum wip changes commit | commitdiff
2016-07-08 tcofoegbuJAL-1919 Fixed failing tests, enabled HETATM processing... commit | commitdiff
2016-06-10 tcofoegbuJAL-1479 updated SIFTS FTP download URL, added improvem... commit | commitdiff
2016-05-17 tcofoegbuJAL-1270 Fixed anntatedPDBFileInputTest and updated... commit | commitdiff
2016-03-24 tcofoegbuJAL-1919 Settings to disable duplicate generation of... commit | commitdiff
2016-03-24 tcofoegbuJAL-1919 Added ability to generate temprature factor... commit | commitdiff
2016-03-23 tcofoegbuJAL-2009 added programmatic custom feature setting... commit | commitdiff
2016-03-15 tcofoegbuJAL-1919 refined structure view annotation settings... commit | commitdiff
2016-03-03 tcofoegbuJAL-1919 fixed bug causing PDBfile test failure commit | commitdiff
2016-03-03 tcofoegbuJAL-1919 PDBfile and JmolParser refactor commit | commitdiff
2016-02-25 tcofoegbuJAL-1919 initial support for mmCIF using JMol API.... commit | commitdiff