source.jalview.org Git - jalview.git/history - src/jalview/io/vcf/VCFLoader.java

2017-09-29	gmungoc	JAL-2738 one sequence feature per (SNP) VCF allele	blob \| commitdiff
2017-09-28	gmungoc	JAL-2738 separate thread to load VCF; update FeatureSet...	blob \| commitdiff \| diff to current
2017-09-28	gmungoc	JAL-1796 GeneLociI as distinguished DBRefEntry	blob \| commitdiff \| diff to current
2017-09-26	gmungoc	JAL-2738 transfer VCF variant features to CDS sequences	blob \| commitdiff \| diff to current
2017-09-26	gmungoc	JAL-2738 unit test for reverse strand gene	blob \| commitdiff \| diff to current
2017-09-25	gmungoc	JAL-2738 use complement base for a VCF variant on rever...	blob \| commitdiff \| diff to current
2017-09-25	gmungoc	JAL-2738 one constant in codebase for "alleles" attribu...	blob \| commitdiff \| diff to current
2017-09-25	gmungoc	JAL-2738 extract SNP variants from SNP or MIXED variant...	blob \| commitdiff \| diff to current
2017-09-22	gmungoc	JAL-2738 extract utility method to MappingUtils	blob \| commitdiff \| diff to current
2017-09-22	gmungoc	JAL-2738 correct handling of reverse strand genes	blob \| commitdiff \| diff to current
2017-09-22	gmungoc	JAL-2738 lookup GRCh38/37 gene mapping	blob \| commitdiff \| diff to current
2017-09-21	gmungoc	JAL-2738 compute VCF on peptide, extract AF (allele...	blob \| commitdiff \| diff to current
2017-09-21	gmungoc	JAL-2738 PoC of Load VCF file on to gene sequence	blob \| commitdiff \| diff to current