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Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git] / src / jalview / jbgui /
2023-11-03 James ProcterJAL-4090 JAL-1551 spotlessApply tree | commitdiff
2023-10-19 James ProcterJAL-4307 View->Ligands submenu, implementation for... tree | commitdiff
2023-08-18 Ben SoaresMerge branch 'improvement/JAL-4206_improve_JalviewFileC... tree | commitdiff
2023-08-18 Ben SoaresMerge branch 'feature/JAL-244_Automatically_adjust_left... tree | commitdiff
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use... tree | commitdiff
2023-07-21 Ben SoaresJAL-244 Fixed idWidth labels in headless mode for non... tree | commitdiff
2023-06-13 Ben SoaresJAL-3416 Removed a few more JInternalFrame icons with... tree | commitdiff
2023-06-07 James ProcterJAL-4195 add exception handling for all image output... tree | commitdiff
2023-05-22 James ProcterMerge branch 'JAL-1551_2_11_3_spotlett' into features... tree | commitdiff
2023-05-20 Ben SoaresJAL-3416 Ensure setFrameIcon(null) is set for remaining... tree | commitdiff
2023-05-19 James ProcterMerge branch 'develop' into features/JAL-4134_use_annot... tree | commitdiff
2023-05-19 James ProcterJAL-1551 spotlessApply tree | commitdiff
2023-05-01 James ProcterJAL-4177 disable ‘Cancel’ as well - since we as yet... features/JAL-4134_treeviewerforcolumns tree | commitdiff
2023-05-01 James ProcterJAL-4123 JAL-3914 JAL-3858 tweak wording and layout... tree | commitdiff
2023-04-22 Ben SoaresJAL-629 Test and fix --annotation --ssannotation args... tree | commitdiff
2023-02-27 Ben SoaresJAL-629 Guesstimate whether to set pLDDT with PDB file tree | commitdiff
2023-02-26 Ben SoaresJAL-629 PAE matrix file guesstimate from filename tree | commitdiff
2023-02-24 Ben SoaresJAL-629 Position GUI widgets for PDF file options.... tree | commitdiff
2023-02-24 Ben SoaresJAL-629 add widgets to StructureChooser for tempfac... tree | commitdiff
2023-02-03 James ProcterMerge branch 'develop' into features/r2_11_2_alphafold... tree | commitdiff
2022-11-02 Ben SoaresJAL-1988 JAL-3772 Moving packages to somewhere more... tree | commitdiff
2022-10-29 Ben SoaresJAL-1988 JAL-3772 removed a debugging log line tree | commitdiff
2022-10-28 Ben SoaresJAL-1988 JAL-3772 Removed 'Wait' button from waitDialog... tree | commitdiff
2022-10-28 Ben SoaresJAL-1988 JAL-3772 Fixed wait between waitDialog appeara... tree | commitdiff
2022-10-27 Ben SoaresJAL-1988 Allow generic Container object in JvOptionPane... tree | commitdiff
2022-10-24 Ben SoaresJAL-1988 JAL-3772 wait timer working first time but... tree | commitdiff
2022-10-24 Ben SoaresJAL-1988 JAL-3772 Non-blocking modal dialogs for unsave... tree | commitdiff
2022-09-26 Ben SoaresJAL-1988 JAL-3772 linked undostack to saved changes... tree | commitdiff
2022-09-23 Ben SoaresJAL-1988 JAL-3772 Quit confirmation dialog boxes with... tree | commitdiff
2022-09-16 Jim ProcterJAL-4062 copy highlighted region docs, new Alignment... tree | commitdiff
2022-09-14 Jim ProcterJAL-4061 JAL-4062 button in Find dialog to copy highlig... tree | commitdiff
2022-09-14 Jim ProcterJAL-4061 JAL-4062 Find can now search features tree | commitdiff
2022-09-02 Ben SoaresJAL-1988 Added a saves in progress check for quit tree | commitdiff
2022-08-31 Ben SoaresJAL-1988 added a saveInProgress stack to BackupFiles tree | commitdiff
2022-07-25 Ben SoaresJAL-4034 button looks better also on other OSes with... tree | commitdiff
2022-07-24 Ben SoaresJAL-4034 add round corners to 3DB confirmation button... tree | commitdiff
2022-07-15 Ben SoaresJAL-4034 Use the new non-modal JDialog for 3DBeacons... tree | commitdiff
2022-07-04 Jim ProcterJAL-4034 Fix #2 show an icon and a button to press... tree | commitdiff
2022-06-28 Ben SoaresMerge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS... tree | commitdiff
2022-06-28 Ben SoaresJAL-1988 Don't put Quit in the File menu if there's... tree | commitdiff
2022-06-23 Ben SoaresMerge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS... tree | commitdiff
2022-06-23 Ben SoaresJAL-1988 Check for setHandler capability to avoid About... tree | commitdiff
2022-06-17 Ben SoaresJAL-3027 Avoid FlatLAF Desktop class is JalviewJS tree | commitdiff
2022-06-15 Jim ProcterJAL-1988 JAL-3416 avoid unnecessary static flag tree | commitdiff
2022-06-15 Jim ProcterJAL-3418 JAL-1988 don’t need java version check anymore tree | commitdiff
2022-06-13 Ben SoaresJAL-1988 Hack to ensure Quit dialog box is moved to... tree | commitdiff
2022-06-13 Ben SoaresJAL-1988 Moved APQHandlers to jalview.jbgui and called... tree | commitdiff
2022-03-08 Jim ProcterJAL-3746 apply copyright to source tree | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 tree | commitdiff
2022-03-08 Ben SoaresJAL-3103 Removed code and unused widgets for defaultBrowser tree | commitdiff
2022-03-08 Ben SoaresJAL-3103 Remove BrowserLauncher2 and use Desktop.browse... tree | commitdiff
2022-03-08 Ben SoaresJAL-3103 Put jalview.jar first in getdown for .properti... tree | commitdiff
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache... tree | commitdiff
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework... tree | commitdiff
2022-01-27 Jim ProcterMerge branch 'bug/JAL-3633_read_proxy_settings_from_jal... tree | commitdiff
2021-11-03 Jim ProcterJAL-3915 remove RNAview opts from preferences. Still... tree | commitdiff
2021-10-01 Jim ProcterJAL-3616 show name of structure viewer in ‘new view... tree | commitdiff
2021-10-01 Jim ProcterJAL-3829 fetch 3D beacons now started by clicking butto... tree | commitdiff
2021-09-24 Jim ProcterJAL-3829 open web page for 3d beacons structure by... features/r2_11_2/JAL-3829_3dbeacons tree | commitdiff
2021-09-24 Jim ProcterJAL-3829 right click to view popup menu to show link... tree | commitdiff
2021-09-14 Ben SoaresJAL-2422 More helpful highlighting/user guidance of... tree | commitdiff
2021-09-13 Jim ProcterJAL-3829 select single best TDB structure and select... tree | commitdiff
2021-09-11 Jim ProcterJAL-3829 patch failing tests and todo for future tree | commitdiff
2021-09-10 Jim ProcterJAL-3829 provide both PDBe queries and 3D-Beacons queri... tree | commitdiff
2021-09-03 Jim ProcterJAL-3829 refactored FilterOption provider to the Struct... tree | commitdiff
2021-08-30 Jim ProcterMerge branch 'feature/JAL-3855_ebi_alphafold_import... tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 pulled out more of the FTS dependent parts... tree | commitdiff
2021-03-19 Ben SoaresJAL-3503 missed a widget being disabled tree | commitdiff
2021-03-19 Ben SoaresJAL-3503 Added a Startup tab in Preferences, with gui... tree | commitdiff
2021-03-05 Ben SoaresJAL-3618 Enable appBundleIsTraversable in JFileChooser... tree | commitdiff
2020-12-11 Ben SoaresJAL-3775 JAL-3633 Make java.net.Authenticator code... tree | commitdiff
2020-11-13 Ben SoaresJAL-3775 Eclipse re-formatting commit tree | commitdiff
2020-11-13 Ben SoaresJAL-3633 last minute refinement so password box doesn... tree | commitdiff
2020-11-13 Ben SoaresJAL-3633 Apply (proxy) button enabled when needed tree | commitdiff
2020-11-13 Ben SoaresJAL-3633 Small changes to allow future fitting with... tree | commitdiff
2020-11-13 Ben SoaresJAL-3275 JAL-3633: JAL-3275 Turned Preferences into... tree | commitdiff
2020-11-13 Ben SoaresJAL-3633 Set proxy preferences before web calls in... tree | commitdiff
2020-11-13 Ben SoaresJAL-3633 Memory only proxy auth password storage. Open... tree | commitdiff
2020-11-12 Ben SoaresJAL-3633 Added Proxy Authentication credentials in... tree | commitdiff
2020-11-12 Ben SoaresJAL-3633 Added Preferences for Proxy Authentication... tree | commitdiff
2020-11-12 Ben SoaresJAL-3633 label.proxy_server -> label.proxy_servers tree | commitdiff
2020-11-12 Ben SoaresJAL-3633 Remember system set proxy properties. Add... tree | commitdiff
2020-08-17 Jim ProcterJAL-3490 merged with 2.11.2 develop tree | commitdiff
2020-06-29 Jim ProcterMerge branch 'bug/JAL-3490findSpanHiddenGaps' into... tree | commitdiff
2020-06-29 gmungocJAL-3518 corrected pulled up focusView() command tree | commitdiff
2020-05-26 gmungocJAL-1761 pattern for structure viewer construction... tree | commitdiff
2020-05-19 gmungocMerge branch 'develop' into feature/JAL-3551Pymol tree | commitdiff
2020-05-11 gmungocJAL-2422 JAL-3551 viewer text/variables generalised... tree | commitdiff
2020-03-30 gmungocMerge branch 'develop' into Jalview-JS/develop tree | commitdiff
2020-03-13 gmungocJAL-3551 working proof of concept of Jalview driving... tree | commitdiff
2020-03-09 gmungocMerge branch 'develop' into feature/JAL-2422ChimeraX tree | commitdiff
2020-02-21 gmungocJAL-2422 tidy of methods and parameters tree | commitdiff
2020-01-31 gmungocJAL-2422 more responsive Chimera/X path prompts in... tree | commitdiff
2020-01-28 gmungocJAL-2422 ChimeraX added to Preferences tree | commitdiff
2020-01-16 Jim ProcterMerge branch 'improvement/JAL-3474_lots_of_.cvsignore_f... tree | commitdiff
2019-12-20 Ben SoaresJAL-3473 Checked value of def and min. Set def to min... tree | commitdiff
2019-12-20 Ben SoaresJAL-3473 Checked value of def and min. Set def to min... tree | commitdiff
2019-12-11 gmungocJAL-3490 extract constants for number of rows in layout tree | commitdiff
2019-12-11 gmungocJAL-3490 revised layout and search algorithm (more... tree | commitdiff
2019-11-05 gmungocJAL-3210 JAL-3130 can't read java.specification.version... tree | commitdiff
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