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Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git] / src / jalview / renderer /
2023-11-13 James ProcterJAL-4090 JAL-1551 source license tree | commitdiff
2023-11-03 James ProcterJAL-4090 JAL-1551 spotlessApply tree | commitdiff
2023-11-02 James ProcterMerge branch 'develop' into patch/JAL-3088_finalbraceno... tree | commitdiff
2023-10-23 James ProcterMerge branch 'develop' into improvement/JAL-4124_dont_d... tree | commitdiff
2023-09-28 James ProcterJAL-3858 improved contactInterval computation and added... tree | commitdiff
2023-09-25 James ProcterJAL-3858 minimum value for a range is used to shade... tree | commitdiff
2023-09-25 James ProcterJAL-3858 javadoc and slightly revised green linear... tree | commitdiff
2023-09-16 Ben SoaresJAL-4250 Fixed blue arrows in drawStemAnnot() tree | commitdiff
2023-09-04 James ProcterJAL-3088 check for validEnd when working out whether... tree | commitdiff
2023-09-04 James ProcterJAL-4250 fix location and height for RNA secondary... tree | commitdiff
2023-09-04 James ProcterJAL-4250 rendition is way too obscure for me tree | commitdiff
2023-09-01 James ProcterJAL-4124 matrix is saved in dataset, with forward refer... tree | commitdiff
2023-08-24 Ben SoaresJAL-4250 Fix bug in vector rendition where more than... improvement/JAL-4250_secondary_structure_annotation_antialias tree | commitdiff
2023-08-24 Ben SoaresJAL-4250 Much simplified glyph creation removing most... tree | commitdiff
2023-08-23 Ben SoaresJAL-4250 Updated jfreesvg to fix round stroke in linegraph. tree | commitdiff
2023-08-23 Ben SoaresJAL-4250 Simplification of polygons and adjustments... tree | commitdiff
2023-08-21 Ben SoaresJAL-4250 revert green to bright green tree | commitdiff
2023-08-21 Ben SoaresJAL-4250 Conservative setting of ANTIALIAS and readjust... tree | commitdiff
2023-08-18 Ben SoaresJAL-4250 Make secondary structure annotation shapes... tree | commitdiff
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use... tree | commitdiff
2023-07-18 James ProcterJAL-3858 flip diagonal so matrix visualisation is top... tree | commitdiff
2023-05-25 James ProcterJAL-4134 popup menu and annotation row property to... tree | commitdiff
2023-05-22 James ProcterJAL-1551 spotless tree | commitdiff
2023-05-19 James ProcterMerge branch 'develop' into features/JAL-4134_use_annot... tree | commitdiff
2023-05-19 James ProcterJAL-1551 spotlessApply tree | commitdiff
2023-05-19 James ProcterJAL-1551 spotlessApply tree | commitdiff
2023-05-14 James ProcterJAL-2349 store/restore mappable contact matrix in proje... tree | commitdiff
2023-05-12 James ProcterJAL-2349 allow PAE or other contact matrices to hold... tree | commitdiff
2023-04-19 Ben SoaresJAL-629 Now showing temp fac and secondary structure... tree | commitdiff
2023-03-24 James ProcterJAL-4158 first attempt at stashing colours for contact... tree | commitdiff
2023-02-22 James ProcterJAL-3858 JAL-2381 allow different linear shading scheme... tree | commitdiff
2023-02-22 James ProcterJAL-4027 JAL-3858 rename CUSTOM_RENDERER to CONTACT_MAT... tree | commitdiff
2023-02-13 James ProcterMerge branch 'develop' into feature/JAL-1713_overviewIn... tree | commitdiff
2023-01-31 James ProcterJAL-1713 update from Jalview 2.11.3 develop tree | commitdiff
2022-10-22 Jim ProcterJAL-2349 JAL-3855 highlight residues associated with... tree | commitdiff
2022-10-21 Jim ProcterJAL-2349 JAL-3855 experiment masking hidden columns... tree | commitdiff
2022-10-20 Jim ProcterJAL-2349 JAL-3855 off by one and daft return tree | commitdiff
2022-10-20 Jim ProcterJAL-2349 avoid div-by-zero when annotation height is... tree | commitdiff
2022-10-20 Jim ProcterJAL-2349 JAL-3855 adapt renderer for AlignmentI.getCont... tree | commitdiff
2022-10-20 Jim ProcterJAL-4033 fix drag selections and distinguish row/column... tree | commitdiff
2022-10-20 Jim ProcterJAL-3855 RGB colours from the alphafold paE scale. tree | commitdiff
2022-10-19 Jim ProcterJAL-2349 JAL-4033 refactored contact matrix geom calc... tree | commitdiff
2022-10-17 Jim ProcterJAL-2349 JAL-3855 column selection highlighting tree | commitdiff
2022-10-15 Jim ProcterJAL-3855 2349 TODO tree | commitdiff
2022-10-14 Jim ProcterMerge branch 'features/JAL-3895_alphafoldcolours' into... tree | commitdiff
2022-09-14 Jim ProcterMerge branch 'bug/JAL-3612_overviewFeatureOrdering... tree | commitdiff
2022-06-24 Jim ProcterJAL-2349 JAL-3855 formatting tree | commitdiff
2022-06-24 Jim ProcterJAL-4033 TODO re highlighting current column selection tree | commitdiff
2022-06-24 Jim ProcterJAL-2349 debugged and simplified (a little) the scaled... tree | commitdiff
2022-06-24 Jim ProcterJAL-2349 JAL-3855 resolve sequence position for contact... tree | commitdiff
2022-06-10 Jim ProcterMerge branch 'features/r2_11_2_alphafold/JAL-2349_JAL... tree | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 tree | commitdiff
2022-02-16 Jim ProcterMerge branch 'develop' into features/r2_11_2_alphafold... tree | commitdiff
2022-02-07 Jim ProcterJAL-3785 JAL- Merge branch 'bug/JAL-3785autoOverviewTit... bug/JAL-3785autoOverviewTitle tree | commitdiff
2021-09-17 Jim ProcterJAL-3079 JAL-3055 remember to reset font transform... tree | commitdiff
2021-08-18 Jim ProcterJAL-2349 - deobfuscate the renderer and fix it .. work... tree | commitdiff
2021-08-11 Jim ProcterMerge branch 'features/JAL-2349_matrixvis' into feature... tree | commitdiff
2020-12-11 gmungocJAL-3612 use _last_ drawn colour per feature type in... bug/JAL-3612_overviewFeatureOrdering tree | commitdiff
2020-12-11 gmungocJAL-1713 fix typo; overview in project with open overvi... tree | commitdiff
2020-12-10 gmungocJAL-1713 refactorings to allow save/restore Overview... tree | commitdiff
2020-08-13 gmungocJAL-3597 additional references nulled, bug in test... tree | commitdiff
2020-07-14 gmungocJAL-3597 additional references nulled, bug in test... tree | commitdiff
2020-05-18 gmungocMerge branch 'Jalview-JS/develop' into develop tree | commitdiff
2020-04-12 gmungocJAL-3596 change redacted tree | commitdiff
2020-04-12 gmungocJAL-3596 don't draw text over features if Show Text... tree | commitdiff
2020-04-07 gmungocJAL-3210 fudge for JalviewJS to avoid IntervalStore... tree | commitdiff
2019-10-08 gmungocMerge branch 'develop' into Jalview-JS/develop tree | commitdiff
2019-06-18 Jim ProcterMerge branch 'features/JAL-2349_matrixvis' into merge... tree | commitdiff
2019-06-06 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2019-04-18 hansonrexplicit Hashtable objects tree | commitdiff
2019-04-03 hansonrreplacing @j2sNative with @j2sIgnore where appropriate... tree | commitdiff
2019-03-27 hansonrisJS cleanup tree | commitdiff
2019-03-13 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2019-02-28 gmungocJAL-3140 confine intervalstore imports to jalview.datam... tree | commitdiff
2019-02-27 gmungocJAL-3202 reduced scope of rendering flags tree | commitdiff
2019-02-27 gmungocJAL-3202 discard zero percentages in extracted profile tree | commitdiff
2019-02-21 gmungocJAL-3187 handle no mapping / complement features withou... tree | commitdiff
2019-02-19 gmungocJAL-3187 hacks to get peptide variant in to Jmol hover... tree | commitdiff
2019-02-18 gmungocJAL-3187 'on top' optional for complementary features tree | commitdiff
2019-01-26 hansonrJalview.isJS() --> Platform.isJS(), DBRefEntry[] -... tree | commitdiff
2019-01-25 gmungocJAL-3187 return a colour for linked features with trans... tree | commitdiff
2019-01-23 gmungocJAL-3187 fix out by one feature on structure position tree | commitdiff
2019-01-22 gmungocJAL-3187 clunky sort by renderorder in findComplementFe... tree | commitdiff
2019-01-21 hansonrisAMac() -> isAMacAndNotJS(), isWindows() -> isWindowsA... tree | commitdiff
2019-01-21 hansonrminor Platform.isAMac() clean up tree | commitdiff
2019-01-21 gmungocJAL-3187 draw complement features on alignment / structure tree | commitdiff
2019-01-21 gmungocJAL-3187 unit tests updated and errors caught tree | commitdiff
2019-01-21 gmungocJAL-3187 findFeaturesAtResidue answer in render order... tree | commitdiff
2019-01-21 gmungocJAL-3187 (hacked up) show complement features on struct... tree | commitdiff
2018-11-29 gmungocJAL-3140 NCList now via IntervalStore library tree | commitdiff
2018-08-30 gmungocJAL-3055 refinements to alternatives to deriveFont tree | commitdiff
2018-08-28 gmungocJAL-3055 corrected logo drawing in JS tree | commitdiff
2018-08-28 gmungocJAL-3055 corrections to use of AffineTransform to scale... tree | commitdiff
2018-08-27 gmungocJAL-3055 restore original deriveFont code for Java... tree | commitdiff
2018-07-03 Jim ProcterJAL-2347 first pass at JAL-2347 - doesn’t quite work... tree | commitdiff
2018-06-27 hansonrJAL-3032 just the changes pulled already tree | commitdiff
2018-06-27 hansonrConsensus LOGO done tree | commitdiff
2018-06-26 gmungocJAL-3032 don't draw AlphaComposite.Clear on background tree | commitdiff
2018-04-18 gmungocMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-03-22 gmungocJAL-2929 unit test, tidy unused/unneeded fields/parameters tree | commitdiff
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