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Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git] / src / jalview / ws / datamodel / alphafold / PAEContactMatrix.java
2023-11-03 James ProcterJAL-4090 JAL-1551 spotlessApply commit | commitdiff
2023-08-31 James ProcterJAL-4124 MappableContactMatrix equivalence and hashCode... commit | commitdiff
2023-08-29 James ProcterJAL-4124 decouple mappable contact matrix mapping logic... commit | commitdiff
2023-07-18 James ProcterJAL-3855 PAE matrices are transposed on import from... commit | commitdiff
2023-05-22 James ProcterJAL-4134 only build tree when showing it in the tree... commit | commitdiff
2023-05-19 James ProcterMerge branch 'develop' into features/JAL-4134_use_annot... commit | commitdiff
2023-05-19 James ProcterJAL-1551 spotlessApply commit | commitdiff
2023-05-18 James ProcterJAL-4134 column grouping model and methods moved to... commit | commitdiff
2023-05-14 James ProcterJAL-2349 fix up tests for Java 11 compatibility and... commit | commitdiff
2023-05-14 James ProcterJAL-2349 store/restore mappable contact matrix in proje... commit | commitdiff
2023-05-12 James ProcterJAL-2349 allow PAE or other contact matrices to hold... commit | commitdiff
2023-05-01 James ProcterJAL-3858 report errors when trying to parse JSON to... commit | commitdiff
2023-04-12 Ben SoaresMerge branch 'develop' into features/r2_11_2_alphafold... commit | commitdiff
2023-03-24 James ProcterJAL-4158 first attempt at stashing colours for contact... commit | commitdiff
2023-03-20 James ProcterJAL-4134 override default hasTree so PAE tree is saved! commit | commitdiff
2023-03-17 James ProcterJAL-4134 store/restore Newick tree for PAE annotation row commit | commitdiff
2023-03-15 James ProcterJAL-4091 JAL-629 ‘Add Reference Annotations’ takes... commit | commitdiff
2023-03-15 James ProcterJAL-4134 JAL-3855 store/restore groups, tree and thresh... commit | commitdiff
2023-03-09 Ben SoaresJAL-629 --argfile=glob implemented. Remove reference... commit | commitdiff
2023-03-08 James ProcterMerge branch 'features/r2_11_2_alphafold/JAL-629' into... commit | commitdiff
2023-03-06 Ben SoaresJAL-629 Fix null AlignPanel. More descriptive label... commit | commitdiff
2023-02-27 James ProcterJAL-4134 allow tree groups to be stored/recovered on... commit | commitdiff
2023-02-24 James ProcterJAL-629 JAL-4124 JAL-3855 test to check we can import... commit | commitdiff
2023-02-24 James ProcterMerge branch 'features/r2_11_2_alphafold/JAL-629' into... features/JAL-3858_PAEsInProjects commit | commitdiff
2023-02-23 Ben SoaresJAL-629 fix a PAEMatrix casting error commit | commitdiff
2023-02-22 James ProcterJAL-3858 persist PAE matrix (only so far) as serialised... commit | commitdiff
2023-02-22 James ProcterJAL-3858 construct a PAE direct from float array commit | commitdiff
2023-02-22 James ProcterJAL-4027 JAL-3858 rename CUSTOM_RENDERER to CONTACT_MAT... commit | commitdiff
2023-02-03 Ben SoaresJAL-629 Fasta sequence id reading whitespace fix. Flexi... commit | commitdiff
2022-12-05 Ben SoaresJAL-629 implementation of --tempfac options commit | commitdiff
2022-10-28 Jim ProcterJAL-2349 allow contact matrix to provide labels for... commit | commitdiff
2022-10-20 Jim ProcterJAL-2349 JAL-3855 ContactListI.getPosition() to recover... commit | commitdiff
2022-10-17 Jim ProcterJAL-3855 bump AF version to 3 - keep contact renderer... commit | commitdiff
2022-10-15 Jim ProcterJAL-3855 pAE v2 import commit | commitdiff
2022-06-24 Jim ProcterJAL-2349 JAL-3855 resolve sequence position for contact... commit | commitdiff
2021-08-20 Jim ProcterJAL-3855 JAL-2349 (d0h) class for holding and accessing... commit | commitdiff