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JAL-3111 release notes first pass complete
[jalview.git] / src /
2019-01-24 Ben SoaresJAL-3141 Added a '.fa' to filename examples tree | commitdiff
2019-01-24 Ben SoaresJAL-3141 Change of label tree | commitdiff
2019-01-24 Ben SoaresJAL-3141 Removed border around example filenames in... tree | commitdiff
2019-01-24 Ben SoaresJAL-3141 New layout and wording of Backups Preferences... tree | commitdiff
2019-01-24 gmungocJAL-3018 Ensembl version updated to 9.0 tree | commitdiff
2019-01-24 Ben SoaresJAL-3141 Reformatted code in eclipse tree | commitdiff
2019-01-23 Ben SoaresJAL-3141 Added Presets options in the Backups Preferenc... tree | commitdiff
2019-01-23 gmungocJAL-3063 correct handling of absent choice element... tree | commitdiff
2019-01-22 Ben SoaresJAL-3141 Fixed what happens when suffix template has... tree | commitdiff
2019-01-21 Ben SoaresJAL-3141 Rejigged the Preferences tab and changed some... tree | commitdiff
2019-01-20 Ben SoaresJAL-3141 removing diagnostic output tree | commitdiff
2019-01-20 Ben SoaresJAL-3141 Fixed example filenames in Preferences pane... tree | commitdiff
2019-01-20 Ben SoaresJAL-3141 Changed suffix position to after the extension... tree | commitdiff
2019-01-20 Ben SoaresJAL-3141 Re-added some changes in Jalview2XML missed... tree | commitdiff
2019-01-18 Jim ProcterMerge branch 'feature/JAL-3063jaxbNoCastor' into featur... tree | commitdiff
2019-01-18 Jim ProcterMerge branch 'develop' into feature/JAL-3063jaxbNoCastor tree | commitdiff
2019-01-18 gmungocJAL-3143 'id' not 'ID' attribute drives generation... tree | commitdiff
2019-01-17 Jim ProcterJAL-3116 clear out whitespace when materialising Sequen... tree | commitdiff
2019-01-16 Ben SoaresJAL-3141 Remove no longer used exampleLabel tree | commitdiff
2019-01-16 Jim ProcterMerge branch 'feature/JAL-3063jaxbNoCastor' into develop tree | commitdiff
2019-01-16 Jim ProcterMerge branch 'features/pca_jaxb_datasetrefs_JAL-3171_JA... tree | commitdiff
2019-01-15 Jim ProcterJAL-1767 refactor associated view logic to public metho... tree | commitdiff
2019-01-14 Ben SoaresJAL-3141 Forgot this file, sorry! tree | commitdiff
2019-01-14 Ben SoaresJAL-3141 Added a 'Save Project as...' File menu item... tree | commitdiff
2019-01-14 Ben SoaresJAL-3141 Made more constants tree | commitdiff
2019-01-14 gmungocJAL-3186 remove Variable Colour from popup menu tree | commitdiff
2019-01-14 gmungocJAL-2069 wider dialog so all fields show! tree | commitdiff
2019-01-14 gmungocJAL-2069 clear any error colour when setting threshold... tree | commitdiff
2019-01-14 gmungocJAL-3125 tidy up tree | commitdiff
2019-01-14 gmungocJAL-3125 avoid slider 'rounding' threshold field value tree | commitdiff
2019-01-09 Ben SoaresJAL-3141 removed redundant method to tests tree | commitdiff
2019-01-09 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into features/pca_j... tree | commitdiff
2019-01-09 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into feature/JAL... tree | commitdiff
2019-01-09 Jim ProcterJAL-3063 remove stale JAXB binding POJO tree | commitdiff
2019-01-09 Ben SoaresJAL-3141 Added i18n for the example filenames in Prefer... tree | commitdiff
2019-01-09 Ben SoaresJAL-3141 forgot to add this file after extracting the... tree | commitdiff
2019-01-09 Ben SoaresJAL-3141 Made one more suggested change from code review tree | commitdiff
2019-01-08 Ben SoaresJAL-3141 Made some more suggested changes from code... tree | commitdiff
2019-01-08 Ben SoaresJAL-3141 Made some suggested changes from code review tree | commitdiff
2019-01-08 gmungocJAL-3180 Disabled 'By Annotation' group colour menu... feature/JAL-3180colourAnnotationMenu tree | commitdiff
2019-01-04 gmungocJAL-3180 fix By Annotation selection state in colour... tree | commitdiff
2019-01-04 gmungocJAL-3181 refactor: extracted buildLinkMenu() for testab... feature/JAL-3181linkOrdering tree | commitdiff
2019-01-04 gmungocJAL-3181 simplified code and test tree | commitdiff
2019-01-03 gmungocJAL-3181 order link menu items tree | commitdiff
2018-12-21 gmungocJAL-1767 minimise local variable scope tree | commitdiff
2018-12-20 Jim ProcterJAL-1767 port save/load PCA panel to JAXB - JAL-3063 tree | commitdiff
2018-12-20 Jim ProcterJAL-3171 JAL-3063 merge updates from JAL-1767 tree | commitdiff
2018-12-19 Jim ProcterMerge branch 'features/JAL-1767pcaInProject' into bug... tree | commitdiff
2018-12-19 gmungocJAL-2621 Overview uses hand cursor in drag box, crossha... bug/JAL-2621 tree | commitdiff
2018-12-19 gmungocJAL-3178 include non-positional features in their group... bug/JAL-2791exportFilteredFeature tree | commitdiff
2018-12-19 gmungocJAL-2791 JAL-2808 correct Javadoc for api method tree | commitdiff
2018-12-17 Jim ProcterMerge branch 'bug/JAL-2864nullOverviewCanvas' into... tree | commitdiff
2018-12-17 Jim ProcterMerge branch 'bug/JAL-2750' into develop tree | commitdiff
2018-12-17 Jim ProcterMerge branch 'develop' into bug/JAL-2541cutRelocateFeatures tree | commitdiff
2018-12-14 Jim ProcterJAL-3171 record mapping between unmarshalled sequence... tree | commitdiff
2018-12-14 Jim ProcterJAL-3171 raise warning when a dataset reference exists... tree | commitdiff
2018-12-14 Jim ProcterJAL-3171 resolve dataset for imported projects via... tree | commitdiff
2018-12-14 Jim ProcterJAL-3171 register existing dataset for new view tree | commitdiff
2018-12-10 gmungocJAL-1421 added type to List and Vector feature/JAL-3169cancelOverwrite tree | commitdiff
2018-12-10 gmungocJAL-3169 leave file browser open on Cancel in overwrite... tree | commitdiff
2018-12-06 gmungocJAL-1854 fix Checkstyle import violations tree | commitdiff
2018-12-03 gmungocJAL-3063 Castor removed from codebase tree | commitdiff
2018-12-03 gmungocMerge branch 'feature/JAL-3063JAXB' into feature/JAL... tree | commitdiff
2018-11-30 gmungocJAL-2420 don't offer Reveal All over alignment panel bug/JAL-2420revealAllMenu tree | commitdiff
2018-11-30 gmungocJAL-3166 catch NPE if all sequences are hidden bug/JAL-3166npeAllRowsHidden tree | commitdiff
2018-11-29 gmungocJAL-3140 NCList now via IntervalStore library tree | commitdiff
2018-11-28 gmungocJAL-3164 redraw complement overview on hide columns bug/JAL-3164complementOverview tree | commitdiff
2018-11-28 gmungocJAL-3158 additional calls to reset 'selection changed... bug/JAL-3158selectionBroadcasts tree | commitdiff
2018-11-22 gmungocJAL-3161 limit tooltip and status updates to visible... bug/JAL-3161annotationTooltipRange tree | commitdiff
2018-11-20 Jim ProcterJAL-3127 Sequence ID Colour and nominal spanish translation tree | commitdiff
2018-11-19 Jim ProcterJAL-3127 javadoc, don’t darken white when shading resid... tree | commitdiff
2018-11-19 Jim ProcterJAL-3156 JAL-3127 code tidy tree | commitdiff
2018-11-19 Jim ProcterJAL-3156 javadoc re JAL-3127 and FIXME to make Alignmen... tree | commitdiff
2018-11-19 Jim ProcterJAL-3127 drop redundant hidden representative sequences... tree | commitdiff
2018-11-19 Jim ProcterJAL-3127 JAL-2773 don’t need to call paintAlignment... tree | commitdiff
2018-11-19 Jim ProcterJAL-3127 tidier tree group colour -> view propagation tree | commitdiff
2018-11-19 gmungocJAL-3154 disable drag to reorder JTable columns bug/JAL-3154tableColumnDrag tree | commitdiff
2018-11-09 Jim ProcterJAL-3127 polished setColor after review tree | commitdiff
2018-11-05 Ben SoaresJAL-3141 couple of minor fixes for example files being... tree | commitdiff
2018-11-02 Ben SoaresJAL-3141 Tests now available and working, bringing... tree | commitdiff
2018-11-01 Ben SoaresJAL-3141 Preferences 'Backups' tab now fits. Moved... tree | commitdiff
2018-10-31 Ben SoaresJAL-3141 Preferences 'Backups' tab now working. Doesn... tree | commitdiff
2018-10-25 Ben SoaresJAL-3141 Ostensibly all backups working for alignment... tree | commitdiff
2018-10-25 gmungocJAL-3143 comma-delimited feature attributes for alleles, tree | commitdiff
2018-10-25 gmungocJAL-3143 fetch Ensembl(Genomes) features as JSON not GFF tree | commitdiff
2018-10-24 Ben SoaresJAL-3141 Code checkout. Not compiling. tree | commitdiff
2018-10-24 Ben SoaresJAL-3141 Code checkout. Not compiling. tree | commitdiff
2018-10-23 Ben SoaresBackupFilter and other unfinished business tree | commitdiff
2018-10-23 gmungocJAL-3139 check group visibility when removing 'redundan... bug/JAL-3139colocatedFeatures tree | commitdiff
2018-10-22 Ben SoaresJAL-3141 Taken the backing up code out of FileChooser... tree | commitdiff
2018-10-22 Ben SoaresJAL-3141 Taken the backing up code out of FileChooser... tree | commitdiff
2018-10-22 Ben SoaresJAL-3141 Tidying tree | commitdiff
2018-10-19 Ben SoaresJAL-3141 Backup files being created with default suffix... tree | commitdiff
2018-10-16 Jim ProcterJAL-3127 always look up sequence ID colour from view... tree | commitdiff
2018-10-16 Jim ProcterJAL-3127 reinstate ability to set sequence ID colour... tree | commitdiff
2018-10-16 Jim ProcterJAL-3127 use AlignViewportI.addGroup to create & propag... tree | commitdiff
2018-10-16 Jim ProcterJAL-3127 use AlignViewportI.addGroup() to add group... tree | commitdiff
2018-10-16 Jim Procterviewport flag to indicate when structure view needs... tree | commitdiff
2018-10-09 Jim ProcterJAL-3127 Colour sequences by ID - need to check that... tree | commitdiff
2018-10-09 Jim ProcterJAL-3127 TODO - resolve reference to Viewport for group... tree | commitdiff
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