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JAL-4086 quick and dirty mouseovers on ruler highlighting all positions highlighted...
[jalview.git] / src /
2022-10-26 Jim ProcterJAL-4086 quick and dirty mouseovers on ruler highlighti... tree | commitdiff
2022-10-22 Jim ProcterJAL-2349 JAL-3855 highlight residues associated with... tree | commitdiff
2022-10-21 Jim ProcterJAL-2349 JAL-3855 fix failing tests tree | commitdiff
2022-10-21 Jim ProcterJAL-2349 JAL-3855 experiment masking hidden columns... tree | commitdiff
2022-10-21 Jim ProcterJAL-4033 - heuristic threshold for pAE matrix - mark... tree | commitdiff
2022-10-20 Jim ProcterJAL-2349 formatting/pick correct exception tree | commitdiff
2022-10-20 Jim ProcterJAL-2349 JAL-3855 off by one and daft return tree | commitdiff
2022-10-20 Jim ProcterJAL-2349 avoid div-by-zero when annotation height is... tree | commitdiff
2022-10-20 Jim ProcterJAL-2349 JAL-3855 adapt renderer for AlignmentI.getCont... tree | commitdiff
2022-10-20 Jim ProcterJAL-2349 JAL-3855 ContactListI.getPosition() to recover... tree | commitdiff
2022-10-20 Jim ProcterJAL-2349 JAL-3855 experimenting with filtering columns... tree | commitdiff
2022-10-20 Jim ProcterJAL-3855 JAL-2349 AlignmentI.getContactList takes care... tree | commitdiff
2022-10-20 Jim ProcterJAL-4033 fix drag selections and distinguish row/column... tree | commitdiff
2022-10-20 Jim ProcterJAL-2349 (still buggy) interactive selection - time... tree | commitdiff
2022-10-20 Jim ProcterJAL-2349 tooltip reports value from contact range tree | commitdiff
2022-10-20 Jim ProcterJAL-2349 adjusted range calculation to be inclusive... tree | commitdiff
2022-10-20 Jim ProcterJAL-2349 debugged click/drag and added yellow rubber... tree | commitdiff
2022-10-20 Jim ProcterJAL-2349 JAL-3855 - interactive point-wise row/column... tree | commitdiff
2022-10-20 Jim ProcterJAL-3855 RGB colours from the alphafold paE scale. tree | commitdiff
2022-10-19 Jim ProcterJAL-2349 JAL-4033 refactored contact matrix geom calc... tree | commitdiff
2022-10-17 Jim ProcterJAL-2349 JAL-3855 column selection highlighting tree | commitdiff
2022-10-17 Jim ProcterJAL-3855 bump AF version to 3 - keep contact renderer... tree | commitdiff
2022-10-17 Jim ProcterJAL-1551 formatting tree | commitdiff
2022-10-17 Jim ProcterJAL-3855 report download errors as errors! tree | commitdiff
2022-10-17 Jim ProcterJAL-2349 JAL-3855 Integrate pAE retrieval in StructureF... tree | commitdiff
2022-10-15 Jim ProcterJAL-2349 reusable contact map holder for SequenceI... tree | commitdiff
2022-10-15 Jim ProcterJAL-3855 2349 TODO tree | commitdiff
2022-10-15 Jim ProcterJAL-3855 import pAE when StructureSelectionManager... tree | commitdiff
2022-10-15 Jim ProcterJAL-3855 pAE v2 import tree | commitdiff
2022-10-14 Jim ProcterJAL-3855 refactor the pAE retrieval code so it can... tree | commitdiff
2022-10-14 Jim ProcterMerge branch 'features/JAL-3895_alphafoldcolours' into... tree | commitdiff
2022-10-14 Jim ProcterMerge branch 'develop' into features/JAL-3895_alphafold... features/JAL-3895_alphafoldcolours tree | commitdiff
2022-10-11 Jim ProcterJAL-4073 fix PEBCAK failure tree | commitdiff
2022-10-07 Jim ProcterFix for JAL-4075 - don’t write a label in secondary... tree | commitdiff
2022-10-06 Jim Procterstable url for PFAM retrieval via interpro api :) JAL... tree | commitdiff
2022-10-06 Jim ProcterJAL-1551 formatting tree | commitdiff
2022-10-06 Jim ProcterJAL-3895 alphafold colours via pluggable annotation... tree | commitdiff
2022-10-06 Jim ProcterJAL-1551 formatting tree | commitdiff
2022-10-06 Jim ProcterJAL-4073 Pfam retrieval now works via a template includ... tree | commitdiff
2022-10-06 Jim ProcterPatch for JAL-4074 - any content ending in ‘gzip’ recog... tree | commitdiff
2022-09-14 Jim ProcterMerge branch 'bug/JAL-3612_overviewFeatureOrdering... tree | commitdiff
2022-08-08 Jim ProcterJAL-4046 JAL-3993 imports reformatting tree | commitdiff
2022-08-08 Jim ProcterJAL-4046 JAL-3993 patch for 2.11.2.4 release tree | commitdiff
2022-08-08 Jim ProcterMerge branch 'task/JAL-3991_check_actual_JAVA_VERSION_a... tree | commitdiff
2022-08-08 Jim ProcterMerge branch 'improvement/JAL-4014_gecos_colour_schemes... tree | commitdiff
2022-08-08 Jim ProcterMerge branch 'patch/JAL-4036_uniprot_fts_legacy_endpoin... tree | commitdiff
2022-08-08 Jim ProcterJAL-4034 show the loading spinner when switching betwee... tree | commitdiff
2022-08-08 Jim ProcterMerge branch 'features/JAL-4034_improve_3dbeacons_butto... tree | commitdiff
2022-07-25 Ben SoaresJAL-4036 moved a comment block tree | commitdiff
2022-07-25 Ben SoaresJAL-4034 button looks better also on other OSes with... tree | commitdiff
2022-07-24 Ben SoaresJAL-4034 add round corners to 3DB confirmation button... tree | commitdiff
2022-07-22 Ben SoaresJAL-4036 Changes made from code review CR-JAL-265 tree | commitdiff
2022-07-22 Ben SoaresJAL-4036 Add getDbName to the GFTSPanelI and add an... tree | commitdiff
2022-07-22 Ben SoaresJAL-4036 removing the query field code from the dropdow... tree | commitdiff
2022-07-21 Ben SoaresJAL-4036 Don't autosearch changing index when autosearc... tree | commitdiff
2022-07-21 Ben SoaresJAL-4036 add search fieldname to dropdown list tree | commitdiff
2022-07-21 Ben SoaresJAL-4036 New configuration, target and pagination proce... tree | commitdiff
2022-07-20 Jim ProcterJAL-4045 - don't apply distribution dependent scale... tree | commitdiff
2022-07-15 Ben SoaresJAL-4034 Use the new non-modal JDialog for 3DBeacons... tree | commitdiff
2022-07-15 Ben SoaresJAL-4034 Allow request for non-modal JDialog, which... tree | commitdiff
2022-07-12 Ben SoaresJAL-4034 change to jalview property name tree | commitdiff
2022-07-12 Ben SoaresJAL-4034 showConfirmDialog works for both desktop and... tree | commitdiff
2022-07-11 Ben SoaresJAL-4034 Non-blocking 3D Beacons query after warning... tree | commitdiff
2022-07-11 Ben SoaresJAL-4034 allow a jalview_property to set the threshold... tree | commitdiff
2022-07-04 Jim ProcterJAL-4034 fix #3 change uniprot ref fetch dialog to... tree | commitdiff
2022-07-04 Jim ProcterJAL-4034 Fix #2 show an icon and a button to press... tree | commitdiff
2022-06-30 Jim ProcterJAL-4036 use the legacy endpoint (and report the FTS... tree | commitdiff
2022-06-28 Ben SoaresMerge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS... tree | commitdiff
2022-06-28 Ben SoaresJAL-1988 Don't put Quit in the File menu if there's... tree | commitdiff
2022-06-24 Jim ProcterJAL-2349 JAL-3855 formatting tree | commitdiff
2022-06-24 Jim ProcterJAL-4033 TODO re highlighting current column selection tree | commitdiff
2022-06-24 Jim ProcterJAL-2349 debugged and simplified (a little) the scaled... tree | commitdiff
2022-06-24 Jim ProcterJAL-3855 update EBI Alphafold barcoded URL generation... tree | commitdiff
2022-06-24 Jim ProcterJAL-2349 JAL-3855 resolve sequence position for contact... tree | commitdiff
2022-06-23 Ben SoaresMerge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS... tree | commitdiff
2022-06-23 Ben SoaresJAL-1988 Check for setHandler capability to avoid About... tree | commitdiff
2022-06-17 Ben SoaresJAL-3027 Avoid FlatLAF Desktop class is JalviewJS tree | commitdiff
2022-06-15 Jim ProcterJAL-1988 JAL-3416 avoid unnecessary static flag tree | commitdiff
2022-06-15 Jim ProcterJAL-3418 JAL-1988 don’t need java version check anymore tree | commitdiff
2022-06-13 Ben SoaresJAL-1988 Hack to ensure Quit dialog box is moved to... tree | commitdiff
2022-06-13 Ben SoaresJAL-1988 Moved APQHandlers to jalview.jbgui and called... tree | commitdiff
2022-06-13 Jim ProcterMerge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS... tree | commitdiff
2022-06-13 Ben SoaresJAL-3416 remove flat as default for linux tree | commitdiff
2022-06-13 Ben SoaresJAL-1988 JAL-3416 Using the flatlaf-extras About, Prefe... tree | commitdiff
2022-06-13 Ben SoaresJAL-3416 Added some mac specific FlatLAF settings.... tree | commitdiff
2022-06-10 Jim ProcterJAL-2349 JAL-4027 JAL-3855 quick hack to add contact... tree | commitdiff
2022-06-10 Jim ProcterJAL-4027 getter for contact matrices on the Alignment. tree | commitdiff
2022-06-10 Jim ProcterJAL-1551 formatting tree | commitdiff
2022-06-10 Jim ProcterMerge branch 'features/r2_11_2_alphafold/JAL-2349_JAL... tree | commitdiff
2022-06-09 Jim ProcterMerge branch 'bug/JAL-4020_add_pymolwin_paths' into... tree | commitdiff
2022-06-09 Jim ProcterJAL-4026 ignore StructureSelectionManager events if... tree | commitdiff
2022-06-09 Jim ProcterJAL-4026 update the viewport’s wrapped width after... tree | commitdiff
2022-06-08 Jim ProcterMerge branch 'improvement/JAL-4023_snotation_for_trees... tree | commitdiff
2022-06-08 Jim ProcterMerge branch 'patch/JAL-4024_jumpScrollHang' into develop tree | commitdiff
2022-06-08 Jim ProcterJAL-4024 only render partially when new view overlaps... patch/JAL-4024_jumpScrollHang tree | commitdiff
2022-06-07 Ben SoaresJAL-4020 class formatting tree | commitdiff
2022-06-07 Ben SoaresJAL-4020 added the \Scripts\pymol.exe. to the pathList tree | commitdiff
2022-06-06 Ben SoaresJAL-4020 Added the +2 arg for PyMOLWin.exe allowing... tree | commitdiff
2022-06-06 Ben SoaresJAL-4020 class reformatting tree | commitdiff
2022-06-06 Ben SoaresJAL-4020 Added path search for global installation... tree | commitdiff
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