git://source.jalview.org / jalview.git / history
? search:
summary | shortlog | log | commit | commitdiff | tree
first ⋅ prev ⋅ next
JAL-2325 finalise release notes
[jalview.git] / src /
2016-11-24 Jim ProcterJAL-2325 applied BSD license for chimera/StrucViz2... tree | commitdiff
2016-11-24 Jim ProcterJAL-2325 apply license to new source files tree | commitdiff
2016-11-23 Jim ProcterMerge branch 'bug/JAL-2323disulfideOverview' into develop tree | commitdiff
2016-11-23 Jim ProcterMerge branch 'documentation/JAL-2325_release2101' into... tree | commitdiff
2016-11-23 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... tree | commitdiff
2016-11-22 Jim ProcterJAL-2197 changed tooltip for Jnet annotation rows to... tree | commitdiff
2016-11-22 tcofoegbuMerge branch 'bug/JAL-2277_refactorPrintUnwrapped'... tree | commitdiff
2016-11-22 Jim ProcterMerge branch 'features/JAL-2177_update_jmol_to_14.6... tree | commitdiff
2016-11-22 gmungocJAL-2337 fix: only adjust once for scroll offset bug/JAL-2277_refactorPrintUnwrapped tree | commitdiff
2016-11-22 gmungocJAL-1919 JAL-2177 handle empty pdbentries list correctly features/JAL-2177_update_jmol_to_14.6.4_2016.10.26 tree | commitdiff
2016-11-22 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... tree | commitdiff
2016-11-22 tcofoegbuJAL-2322 added runnable interface to HTMLOutput class... tree | commitdiff
2016-11-22 Jim ProcterMerge branch 'features/JAL-1738_JAL-345_selectionfromhi... tree | commitdiff
2016-11-22 Jim ProcterJAL-1738 JAL-345 changed keystroke to ‘B’ (with modifie... tree | commitdiff
2016-11-22 gmungocJAL-2277 refactored AlignmentPanel.printUnwrapped to... tree | commitdiff
2016-11-21 tcofoegbuJAL-2277 bug fix for mis-alligned graphics output for... tree | commitdiff
2016-11-21 Jim ProcterJAL-2335 patched FeatureRendererModel.findFeaturesAtRes... bug/JAL-2323disulfideOverview tree | commitdiff
2016-11-21 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-11-21 tcofoegbuJAL-2332 bugfix to enable structure chooser opening... tree | commitdiff
2016-11-21 gmungocJAL-2333 corrected select columns with 'contact' feature tree | commitdiff
2016-11-21 gmungocMerge branch 'develop' into bug/JAL-2323disulfideOverview tree | commitdiff
2016-11-18 gmungocJAL-98 with the two types missing from last commit... bug/JAL-98consensusMemory tree | commitdiff
2016-11-17 gmungocJAL-2323 revert to thread-safe iteration over array... tree | commitdiff
2016-11-17 gmungocJAL-98 ProfilesI container for profiles for columns tree | commitdiff
2016-11-17 gmungocJAL-98 javadoc, third party acknowledgements (and very... tree | commitdiff
2016-11-17 gmungocJAL-2327 disulfide bond abstracted to SequenceFeature... tree | commitdiff
2016-11-17 gmungocJAL-2327 add isContactFeature tree | commitdiff
2016-11-16 Jim ProcterMerge branch 'features/JAL-1723_sequenceReport' into... tree | commitdiff
2016-11-16 gmungocJAL-2323 render disulfide bond correctly on overview... tree | commitdiff
2016-11-16 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-11-16 tcofoegbuJAL-2322 JAL-2309 replaced references to isheadless... tree | commitdiff
2016-11-16 gmungocJAL-2324 fix and tests for comparison of Float.NaN... tree | commitdiff
2016-11-16 gmungocJAL-2319 corrected reporting of SIFTS mapping tree | commitdiff
2016-11-14 tcofoegbuJAL-2322 Refactored unified architecture for data ... tree | commitdiff
2016-11-11 tcofoegbuJAL-2277 Refactored out duplicated method - printUnwrap... tree | commitdiff
2016-11-10 tcofoegbuMerge branch 'develop' into bug/JAL-2317_jmol_chimera... tree | commitdiff
2016-11-10 tcofoegbuJAL-2317 Fixed Chimera command for hiding/showing disti... bug/JAL-2317_jmol_chimera-chain-factorisation tree | commitdiff
2016-11-10 tcofoegbuBugfix to enable accurate chain extraction/association... tree | commitdiff
2016-11-08 gmungocJAL-2301 made T hydrophobic as per the cited conservati... tree | commitdiff
2016-11-08 tcofoegbuJAL-2292 updated method calls tree | commitdiff
2016-11-08 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-11-08 tcofoegbuJAL-2292 renamed method and improved implementation... tree | commitdiff
2016-11-07 gmungocJAL-2272 unit tests added for Platform.isControlDown tree | commitdiff
2016-11-07 gmungocJAL-2282 show url links that need checked; remove ... tree | commitdiff
2016-11-04 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'... tree | commitdiff
2016-11-04 kiramtJAL-2315 Clear sequenceURLLinks if all sequence links... tree | commitdiff
2016-11-04 tcofoegbuJAL-2292 squashed bug that breaks feature mapping for... tree | commitdiff
2016-11-04 tcofoegbuJAL-2292 added javadoc for compareChar(..) utility... tree | commitdiff
2016-11-04 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-11-04 tcofoegbuJAL-2195 JAL-2262 house keeping tree | commitdiff
2016-11-04 tcofoegbuJAL-2292 fix for wrong mapping output in sequence mappi... tree | commitdiff
2016-11-04 tcofoegbuJAL-2292 Wrote utility method for comparing two char... tree | commitdiff
2016-11-04 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'... tree | commitdiff
2016-11-04 kiramtJAL-2282 Better check for existing url links tree | commitdiff
2016-11-04 gmungocJAL-2272 right mouse button on Mac is not Cmd equivalent! tree | commitdiff
2016-11-04 kiramtJAL-2282 Remove Cache dependency from applet tree | commitdiff
2016-11-04 kiramtJAL-2282 Message box stays on top at Jalview open;... tree | commitdiff
2016-11-04 gmungocJAL-966 JAL-1854 removed redundant methods / modifiers... tree | commitdiff
2016-11-03 kiramtJAL-2282 Link menu disabled if there are no valid links tree | commitdiff
2016-11-03 kiramtJAL-2282 If checkbox on warning dialog is unclicked... tree | commitdiff
2016-11-03 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-11-03 tcofoegbuJAL-2312 Bug fix for repeated mapping generation from... tree | commitdiff
2016-11-03 gmungocJAL-2310 don't double-count sequence matches; code... tree | commitdiff
2016-11-02 Jim ProcterJAL-345 JAL-1738 menu item, AlignFrame action listener... tree | commitdiff
2016-11-02 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'... tree | commitdiff
2016-11-02 Jim ProcterJAL-1738 JAL-345 fix for JAL-2302 only report Matches... tree | commitdiff
2016-11-02 kiramtJAL-2281 Use DBRefs.selectRefs to uppercase URL link... tree | commitdiff
2016-11-02 kiramtJAL-2282 Refactor applet too tree | commitdiff
2016-11-02 Jim ProcterJAL-345 javadoc and note about JAL-2300 tree | commitdiff
2016-11-02 Jim ProcterJAL-354 JAL-1738 add returns SearchResultMatchI instanc... tree | commitdiff
2016-11-02 Jim ProcterJAL-966 JAL-345 JAL-1738 decontaminate SearchResultI... tree | commitdiff
2016-11-02 Jim ProcterJAL-966 JAL-345 JAL-1738 quick rewrite of scrollToPosit... tree | commitdiff
2016-11-02 gmungocJAL-98 JAL-1854 encapsulate 'magic number' threshold... tree | commitdiff
2016-11-02 gmungocJAL-98 ProfileI interface for Profile tree | commitdiff
2016-11-02 gmungocJAL-98 Profile and ResidueCount moved from analysis... tree | commitdiff
2016-11-02 gmungocJAL-98 wording "negatively conserved" now "absence... tree | commitdiff
2016-11-02 kiramtJAL-2282 Code tidy tree | commitdiff
2016-11-02 kiramtJAL-2282 Renamed internal use of sequence id / db acces... tree | commitdiff
2016-11-02 kiramtJAL-2282 URLLink unit tests updated tree | commitdiff
2016-11-01 Jim ProcterJAL-1738 JAL-345 fix broken calculation of newly marked... tree | commitdiff
2016-11-01 gmungocConservation now using ResidueCount; tests added tree | commitdiff
2016-11-01 gmungocJAL-98 use Integer constants; tests added for propHash... tree | commitdiff
2016-11-01 gmungocJAL-98 typo in javadoc tree | commitdiff
2016-11-01 gmungocJAL-98 simplified repeat() method tree | commitdiff
2016-11-01 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-11-01 tcofoegbuJAL-2280 refactored and improved structure file identif... tree | commitdiff
2016-11-01 kiramtJAL-2282 Refactor SequenceAnnotationReport to use refac... tree | commitdiff
2016-11-01 kiramtJAL-2282 Changed DB accession id token to $DB_ACCESSION... tree | commitdiff
2016-11-01 kiramtJAL-2282 Refactored URL link creation into UrlLink tree | commitdiff
2016-11-01 kiramtJAL-2282 Removed unexpected ; from code tree | commitdiff
2016-11-01 kiramtJAL-2282 Force double-clicking to use sequence_id cases... tree | commitdiff
2016-10-31 gmungocJAL-98 round when formatting dec places tree | commitdiff
2016-10-31 gmungocJAL-1723 ellipsis in tooltip if xrefs to more than... tree | commitdiff
2016-10-31 gmungocMerge branch 'develop' into features/JAL-1723_sequenceR... tree | commitdiff
2016-10-31 kiramtForce double-clicking to use sequence_id cases and... tree | commitdiff
2016-10-31 kiramtUse ACCESSION_ID for database accession id, and SEQUENC... tree | commitdiff
2016-10-30 Jim ProcterJAL-1738 JAL-345 new controller method based on mark... tree | commitdiff
2016-10-30 Jim ProcterJAL-345 JAL-1738 SearchResultI method to mark columns... tree | commitdiff
2016-10-30 Jim ProcterJAL-966 clarify javadoc for SearchResultsI.getResults tree | commitdiff
2016-10-28 Jim ProcterJAL-966 SearchResultsI now on viewmodels.AlignmentViewp... tree | commitdiff
next