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JAL-2250 default Apply Colour to All Groups selected
[jalview.git] / src /
2019-01-09 Jim ProcterJAL-3063 remove stale JAXB binding POJO tree | commitdiff
2019-01-09 Ben SoaresJAL-3141 Added i18n for the example filenames in Prefer... tree | commitdiff
2019-01-09 Ben SoaresJAL-3141 forgot to add this file after extracting the... tree | commitdiff
2019-01-09 Ben SoaresJAL-3141 Made one more suggested change from code review tree | commitdiff
2019-01-08 Ben SoaresJAL-3141 Made some more suggested changes from code... tree | commitdiff
2019-01-08 Ben SoaresJAL-3141 Made some suggested changes from code review tree | commitdiff
2018-12-21 gmungocJAL-1767 minimise local variable scope tree | commitdiff
2018-12-20 Jim ProcterJAL-1767 port save/load PCA panel to JAXB - JAL-3063 tree | commitdiff
2018-12-20 Jim ProcterJAL-3171 JAL-3063 merge updates from JAL-1767 tree | commitdiff
2018-12-19 Jim ProcterMerge branch 'features/JAL-1767pcaInProject' into bug... tree | commitdiff
2018-12-19 gmungocJAL-2621 Overview uses hand cursor in drag box, crossha... bug/JAL-2621 tree | commitdiff
2018-12-19 gmungocJAL-3178 include non-positional features in their group... bug/JAL-2791exportFilteredFeature tree | commitdiff
2018-12-19 gmungocJAL-2791 JAL-2808 correct Javadoc for api method tree | commitdiff
2018-12-17 Jim ProcterMerge branch 'bug/JAL-2864nullOverviewCanvas' into... tree | commitdiff
2018-12-17 Jim ProcterMerge branch 'bug/JAL-2750' into develop tree | commitdiff
2018-12-17 Jim ProcterMerge branch 'develop' into bug/JAL-2541cutRelocateFeatures tree | commitdiff
2018-12-14 Jim ProcterJAL-3171 record mapping between unmarshalled sequence... tree | commitdiff
2018-12-14 Jim ProcterJAL-3171 raise warning when a dataset reference exists... tree | commitdiff
2018-12-14 Jim ProcterJAL-3171 resolve dataset for imported projects via... tree | commitdiff
2018-12-14 Jim ProcterJAL-3171 register existing dataset for new view tree | commitdiff
2018-12-10 gmungocJAL-1421 added type to List and Vector feature/JAL-3169cancelOverwrite tree | commitdiff
2018-12-10 gmungocJAL-3169 leave file browser open on Cancel in overwrite... tree | commitdiff
2018-12-06 gmungocJAL-1854 fix Checkstyle import violations tree | commitdiff
2018-12-03 gmungocJAL-3063 Castor removed from codebase tree | commitdiff
2018-12-03 gmungocMerge branch 'feature/JAL-3063JAXB' into feature/JAL... tree | commitdiff
2018-11-30 gmungocJAL-2420 don't offer Reveal All over alignment panel bug/JAL-2420revealAllMenu tree | commitdiff
2018-11-30 gmungocJAL-3166 catch NPE if all sequences are hidden bug/JAL-3166npeAllRowsHidden tree | commitdiff
2018-11-29 gmungocJAL-3140 NCList now via IntervalStore library tree | commitdiff
2018-11-28 gmungocJAL-3164 redraw complement overview on hide columns bug/JAL-3164complementOverview tree | commitdiff
2018-11-28 gmungocJAL-3158 additional calls to reset 'selection changed... bug/JAL-3158selectionBroadcasts tree | commitdiff
2018-11-22 gmungocJAL-3161 limit tooltip and status updates to visible... bug/JAL-3161annotationTooltipRange tree | commitdiff
2018-11-19 gmungocJAL-3154 disable drag to reorder JTable columns bug/JAL-3154tableColumnDrag tree | commitdiff
2018-11-05 Ben SoaresJAL-3141 couple of minor fixes for example files being... tree | commitdiff
2018-11-02 Ben SoaresJAL-3141 Tests now available and working, bringing... tree | commitdiff
2018-11-01 Ben SoaresJAL-3141 Preferences 'Backups' tab now fits. Moved... tree | commitdiff
2018-10-31 Ben SoaresJAL-3141 Preferences 'Backups' tab now working. Doesn... tree | commitdiff
2018-10-25 Ben SoaresJAL-3141 Ostensibly all backups working for alignment... tree | commitdiff
2018-10-25 gmungocJAL-3143 comma-delimited feature attributes for alleles, tree | commitdiff
2018-10-25 gmungocJAL-3143 fetch Ensembl(Genomes) features as JSON not GFF tree | commitdiff
2018-10-24 Ben SoaresJAL-3141 Code checkout. Not compiling. tree | commitdiff
2018-10-24 Ben SoaresJAL-3141 Code checkout. Not compiling. tree | commitdiff
2018-10-23 Ben SoaresBackupFilter and other unfinished business tree | commitdiff
2018-10-23 gmungocJAL-3139 check group visibility when removing 'redundan... bug/JAL-3139colocatedFeatures tree | commitdiff
2018-10-22 Ben SoaresJAL-3141 Taken the backing up code out of FileChooser... tree | commitdiff
2018-10-22 Ben SoaresJAL-3141 Taken the backing up code out of FileChooser... tree | commitdiff
2018-10-22 Ben SoaresJAL-3141 Tidying tree | commitdiff
2018-10-19 Ben SoaresJAL-3141 Backup files being created with default suffix... tree | commitdiff
2018-10-08 gmungocJAL-1244 comments, javadoc, method signature tweaks feature/JAL-1244stretchStatusMsg tree | commitdiff
2018-10-08 gmungocJAL-1244 editSequence extract method refactoring tree | commitdiff
2018-10-05 gmungocJAL-1244 improved status message for insert/delete gap tree | commitdiff
2018-10-04 gmungocJAL-3132 status message for sequence and/or graph group... tree | commitdiff
2018-10-04 gmungocJAL-1244 no status message (yet) for locked edit of... tree | commitdiff
2018-10-04 gmungocJAL-1244 status message for insert/delete gaps on singl... tree | commitdiff
2018-10-04 gmungocJAL-1244 status message while dragging a stretch group tree | commitdiff
2018-10-04 gmungocJAL-3132 set status message when over sequence id or... tree | commitdiff
2018-10-04 gmungocJAL-3093 unit tests, no mouse action over left/right... tree | commitdiff
2018-10-03 gmungocJAL-3093 tweaks to code and test for 3px gap above... tree | commitdiff
2018-10-02 gmungocJAL-3093 unit tests for SeqPanel.findMousePosition tree | commitdiff
2018-10-02 gmungocJAL-3093 limited Consensus popup menu when in wrapped... tree | commitdiff
2018-10-02 gmungocJAL-3093 added MousePos.isOverAnnotation() for extra... tree | commitdiff
2018-10-01 gmungocJAL-3093 'read-only' annotations when in wrapped mode tree | commitdiff
2018-10-01 gmungocJAL-3093 refactor (+test) Annotation Labels tooltip... tree | commitdiff
2018-10-01 gmungocJAL-3093 show annotation tooltips and status message... tree | commitdiff
2018-09-28 gmungocJAL-3063 service param files read/saved using JAXB... tree | commitdiff
2018-09-28 gmungocJAL-3063 top level element added to JalviewWsParamSet.xsd tree | commitdiff
2018-09-27 gmungocJAL-2791 refactored Export Features to apply all visibi... tree | commitdiff
2018-09-27 gmungocJAL-2791 new method to test if feature fails colour... tree | commitdiff
2018-09-27 gmungocJAL-2791 method that tests all conditions for feature... tree | commitdiff
2018-09-26 gmungocJAL-3125 tidy up tree | commitdiff
2018-09-26 gmungocJAL-3125 avoid slider 'rounding' threshold field value tree | commitdiff
2018-09-24 gmungocJAL-3063 tidy commented out code tree | commitdiff
2018-09-21 gmungocJAL-3063 wrappers with check for null getting optional... tree | commitdiff
2018-09-21 gmungocJAL-3120 preserve feature colour/mincolour/maxcolour... bug/JAL-3120restoreFeatureColour tree | commitdiff
2018-09-20 gmungocJAL-2843 help text for colour by attribute, feature... tree | commitdiff
2018-09-19 gmungocJAL-3120 preserve plain colour value when changing... tree | commitdiff
2018-09-19 Jim ProcterJAL-2808 JAL-3026 deleted all commented out tab code... tree | commitdiff
2018-09-19 gmungocJAL-2808 JAL-3032 drop tabbed layout for Colours and... tree | commitdiff
2018-09-19 gmungocJAL-3063 use JAXB for 'Save as Project' and load projec... tree | commitdiff
2018-09-18 gmungocJAL-3063 Save/Load user defined colours using JAXB tree | commitdiff
2018-09-18 gmungocJAL-3063 Save/Load user colour scheme using JAXB tree | commitdiff
2018-09-18 gmungocJAL-3063 top level element added to colours schema... tree | commitdiff
2018-09-18 gmungocJAL-3063 New View via JAXB tree | commitdiff
2018-09-18 gmungocJAL-3063 temporary extra menu option to save/load proje... tree | commitdiff
2018-09-18 gmungocJAL-3063 first version of Jalview2XML using JAXB to... tree | commitdiff
2018-09-18 gmungocJAL-3063 JAXB binding classes generated by xjc from... tree | commitdiff
2018-09-18 Jim ProcterJAL-3035 more dedasification tree | commitdiff
2018-09-17 gmungocJAL-3116 unit tests adapted to EMBL over JAXB tree | commitdiff
2018-09-14 gmungocJAL-3116 parse EMBL XML with JAXB (todo: update unit... tree | commitdiff
2018-09-13 gmungocJAL-3116 Uniprot XML unmarshalled using JAXB not Castor tree | commitdiff
2018-09-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_Branch tree | commitdiff
2018-09-10 gmungocJAL-3099 use Alignment.getVisibleWidth() where wanted bug/JAL-3099alignmentVisibleWidth tree | commitdiff
2018-09-10 gmungocJAL-3099 new method AlignmentI.getVisibleWidth() tree | commitdiff
2018-09-10 gmungocJAL-3097 adjust viewport width on hiding columns bug/JAL-3097blankExtraColumns tree | commitdiff
2018-09-10 gmungocJAL-3108 fix concurrency bug in Reveal action handler tree | commitdiff
2018-09-09 Jim ProcterJAL-3106 normalise extension before checking if it... tree | commitdiff
2018-09-07 Jim ProcterJAL-3107 update any group associated annotation rows... tree | commitdiff
2018-09-07 Jim ProcterJAL-2988 if selected file is null (On Java 10/OSX ... tree | commitdiff
2018-09-07 Jim ProcterJAL-2988 workaround: overload getSelectedFile() because... tree | commitdiff
2018-09-07 Jim ProcterJAL-3106 use .jvp as default tree | commitdiff
2018-09-07 Jim ProcterJAL-3105 fix for focus transfer after window closed... tree | commitdiff
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