JAL-3789 Use j2s.config.altfileproperty in .j2s for alternative temporary build/jalvi...
[jalview.git] / src /
2020-06-30 gmungocJAL-3446 unused imports removed
2020-06-30 gmungocJAL-3648 resize annotation panel after dragging to...
2020-06-29 Jim ProcterJAL-3493 fix patch for 2.11.1_js (nb - these changes...
2020-06-29 Jim ProcterJAL-3493 clear search highlights when escape/deselect all
2020-06-18 BobHansonJAL-3659 unnecessary duplication -- test is made in...
2020-06-18 BobHansonJAL-3446 unintentially left training message in code.
2020-06-17 Jim ProcterJAL-3662 JAL-3660 JAL-3561 source formatting
2020-06-17 Jim ProcterJAL-3660 JAL-3561 output alignment as requested file... cherrypicks/JAL-3660_JAL-3561_JAL-3662_cli_outputformat
2020-06-16 BobHansonJAL-3659 proper headless check; skips setProperty for JS
2020-06-16 BobHansonJAL-3662 simple fix for CLI not using right format...
2020-06-16 BobHansonMerge branch 'Jalview-JS/develop' of https://source...
2020-06-16 BobHansonJAL-3446 -- YEIKS! two checkURLLinks calls!
2020-06-16 gmungocMerge branch 'Jalview-JS/develop' of https://source...
2020-06-16 gmungocJAL-3583 better handling of null or empty tooltip on...
2020-06-16 gmungocJAL-3446 defer size calculations until panel added...
2020-06-16 BobHansonJAL-3446 proper call for headless state
2020-06-16 BobHansonJAL-3446 CommandLineOperation test
2020-06-16 BobHansonJAL-3446 CommandLineOperation test
2020-06-16 BobHansonJAL-3446 CTRL-DOWN check for headless operation
2020-06-15 gmungocJAL-3446 breaking change redacted
2020-06-15 gmungocMerge branch 'Jalview-JS/develop' of https://source...
2020-06-14 BobHansonJAL-3445 BSML BBB file format.
2020-06-13 BobHansonJAL-3487 Splash screen
2020-06-13 BobHansonJAL-3487 Splash screen
2020-06-12 soaresJAL-3446 fixing a bad merge, sorry
2020-06-12 soaresJAL-3446 separated out potential exceptions for simplif...
2020-06-12 BobHansonJAL-3446 removing mouse button test debug
2020-06-12 BobHansonJAL-3446 from applet -- reload; also fixes some repaint...
2020-06-11 gmungocJAL-3624 unneeded import removed
2020-06-11 BobHansonJAL-3446 misplaced } removed drop and window listeners...
2020-06-11 BobHansonJAL-3446 no need for SHIFT_DOWN or ALT_DOWN masks
2020-06-11 BobHansonFirst try at merging didn't go so well.
2020-06-11 BobHansonMerge branch 'Jalview-JS/develop.JAL-3446.ctrlDown...
2020-06-11 BobHansonJAL-3446, JAL-3647 after first successful test run;
2020-06-10 BobHansonBamboo text #35 - simpler logic; avoids impossible...
2020-06-10 BobHansonBamboo test #3 The problem is not threading. It is...
2020-06-10 BobHansonBamboo test 2 -- threads and stacktrace
2020-06-10 BobHansonSo close! Bamboo test
2020-06-10 BobHansonJAL-3446 JAL-3645 tooltip testing not intended to be...
2020-06-10 BobHansonJAL-3645 errant "g" in JavaDoc
2020-06-10 BobHansonJAL-3446 from applet, JAL-3584 tooltip fixes <br> and...
2020-06-10 BobHansonJAL-3446 tests - Popup/HTML changes in Applet
2020-06-10 BobHansonJAL-3446 AlignViewportTest
2020-06-10 BobHansonJAL-3446 Dynamic menu - Moves calc sortby tree item...
2020-06-09 BobHansonJAL-3446 problem with Select-Find tooltip
2020-06-09 BobHansonJAL-3446 from applet; JAL-3374
2020-06-09 BobHansonJAL-3446 from applet - Cache news date fix
2020-06-09 BobHansonJAL-3446 from JAL-3253-applet SequenceFetcher.getInsta...
2020-06-09 BobHansonJAL-3446 from JAL-3253-applet Tree Canvas bug fix
2020-06-08 BobHansonJAL-3446 minor SwingJS-site.zip fixes; Assets.
2020-06-07 BobHansonJAL-3446 AppletParams
2020-06-07 BobHansonJAL-3446 reorganized JalviewJSApp (accidentally put...
2020-06-07 BobHansonreorganized JalviewJSApp (accidentally put that in...
2020-06-07 BobHansonJAL-3446 JavaScript interface
2020-06-07 BobHansonJAL-3446 Desktop fix for embedding
2020-06-06 BobHansonJAL-3446 no actual changes; just using meaningful frame...
2020-06-06 BobHansonJAL-3446 adds Jmol viewer embedding.
2020-06-06 BobHansonJAL-3379 JalviewJS-API specs - preliminary
2020-06-05 BobHansonJAL-3446 UrlDownloadClient and Test
2020-06-05 BobHansonJAL-3446 Desktop JS needs getIdentifiersOrgData();
2020-06-05 BobHansonJAL-3446 forgot to escape Java in modified Platform...
2020-06-05 BobHansonJAL-3446 new Locale("") moved to Platform for review.
2020-06-05 BobHansonJAL-3446 AlignmentSorter/Test more documentation...
2020-06-05 BobHansonJAL-3446 AlignmentSorter/Test fixed for instance
2020-06-05 BobHansonJAL-3446 removes all JalviewJSApp dependency from jalvi...
2020-06-05 BobHansonMerge branch 'Jalview-JS/develop' of https://source...
2020-06-05 BobHansonRefactoring of Jalview, JalviewAppLoader, JalviewApp...
2020-06-04 gmungocJAL-1191 reduce logging level for warnings
2020-06-04 gmungocJAL-3446 post-merge unit test fixes, formatting
2020-06-03 BobHansonJAL-3664 support for new Locale(""), meaning "not actua...
2020-06-03 BobHansonJAL-3664 support for user.home, user.dir, user
2020-06-03 BobHansonJAL-3446 adds SIFTs JAL-3625 SiftsClient
2020-06-03 BobHansonJAL-3446 from JAL-3253 ApplicationSingletonProvider...
2020-06-03 BobHansonJAL-3446 AsyncSwingWorker upgrade
2020-06-03 BobHansonJAL-3446 from JAL-3253 Discoverers
2020-06-03 BobHansonJAL-3446 from JAL-3253 ApplicationSingletonProvider
2020-06-03 BobHansonJAL-3446 from JAL-3253 ApplicationSingletonProvider...
2020-06-02 BobHansonJAL-3446 from JAL-3253 ApplicationSingletonProvider...
2020-06-02 BobHansonJAL-3446 JAL-3401 from JAL-3253 HoldRepaint and SeqCanv...
2020-06-02 BobHansonJAL-3446 from JAL-3253-applet Jalview2XML integration...
2020-06-02 BobHansonJAL-3446 from JAL-3253-applet Desktop and Jws2Discovere...
2020-06-02 BobHansonJAL-3446 JAL-3401 from JAL-3253-applet AlignmentPanel...
2020-06-02 BobHansonJAL-3446 from JAL-3253 AppletFormatAdapter not fixed
2020-06-02 BobHansonPreferences/StructureViewer fix
2020-06-02 BobHansonthis was supposed to go on a separate branch. Didn...
2020-06-02 BobHansonJAL-3446 JAL-3253 JAL-3445 BSML bbb XML format reader...
2020-06-02 BobHansonJAL-3446 test for simpler key mask operation
2020-06-02 BobHansonJAL-3446 test for simpler key mask operation
2020-06-02 BobHansonJAL-3446 JAL-3253 Preferences
2020-06-02 BobHansonJAL-3446 from JAL-3253-applet StockholmFile updated...
2020-06-02 gmungocJAL-3446 fix broken test
2020-06-02 BobHansonJAL-3626 from JAL-3253-applet Jalview.java
2020-06-02 BobHansonJAL-3626 from JAL-3253-applet Cache applicationProperti...
2020-06-02 BobHansonJAL-3626 from JAL-3253-applet web page embedding
2020-06-01 BobHansonJAL-3626 from JAL-3253-applet JalviewLite scrollTo...
2020-06-01 BobHansonJAL-3626 from JAL-3253-applet CalculationChooser
2020-06-01 BobHansonJAL-3626 from JAL-3253-applet StructureViewer/Chooser
2020-06-01 BobHansonJAL-3262 from JAL-3253-applet temp. Desktop instance...
2020-06-01 BobHansonJAL-3262 from JAL-3253-applet JalviewApp integration
2020-06-01 BobHansonJAL-3262 from JAL-3253-applet JalviewApp integration
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