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JAL-3744 this obvious attempt to detect/gunzip file input for jalviewjs fails
[jalview.git] / src /
2020-09-10 Ben SoaresJAL-3744 this obvious attempt to detect/gunzip file... bug/JAL-3744_read_gzip_file_in_jalviewjs tree | commitdiff
2020-08-21 Jim ProcterJAL-3615 code tidy, improve unit test tree | commitdiff
2020-08-20 Ben SoaresJAL-2656 better read of (potential) gzip magic bytes tree | commitdiff
2020-08-18 gmungocJAL-2656 Java 8 compatible test for gzipped, refactored... tree | commitdiff
2020-07-28 Jim ProcterJAL-3615 JAL-2656 missing import after cherrypick tree | commitdiff
2020-07-28 Jim ProcterJAL-2656 recognise non-HTTP URI input streams as gzippe... tree | commitdiff
2020-07-28 Jim ProcterJAL-2656 recognise Gzipped file input streams by their... tree | commitdiff
2020-07-02 gmungocJAL-2656 JAL-3615 check response headers to test for... tree | commitdiff
2020-07-02 gmungocJAL-3615 used gzip endpoints for Pfam and Rfam tree | commitdiff
2020-06-29 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... tree | commitdiff
2020-06-29 Jim ProcterJAL-3493 clear search highlights when escape/deselect all tree | commitdiff
2020-06-29 gmungocJAL-3674 more finessed asynchronous structure commands tree | commitdiff
2020-06-29 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2020-06-29 gmungocJAL-3518 corrected pulled up focusView() command tree | commitdiff
2020-06-29 gmungocJAL-3518 corrected action on pulled up closeViewer() tree | commitdiff
2020-06-28 gmungocJAL-3551 PyMOL command constants tidied tree | commitdiff
2020-06-28 gmungocJAL-3551 fit to window (zoom) command for PyMOL tree | commitdiff
2020-06-26 Jim ProcterJAL-3673 make sure font metrics are updated if dealing... tree | commitdiff
2020-06-26 Jim ProcterJAL-3518 fix highlighting in Jalview for selections... tree | commitdiff
2020-06-26 Jim ProcterJAL-3672 debug=false means no debug output tree | commitdiff
2020-06-26 Jim ProcterJAL-3672 more efficient when debug not enabled tree | commitdiff
2020-06-26 Jim ProcterJAL-3671 hardwire log4j.root logger to INFO to supress... tree | commitdiff
2020-06-26 gmungocJAL-3518 tidy up asynchronous structure command execution tree | commitdiff
2020-06-25 gmungocJAL-2010 unused prototype method removed tree | commitdiff
2020-06-25 gmungocJAL-3518 pull up [get|list]ResidueAttributes to Structu... tree | commitdiff
2020-06-23 gmungocJAL-3518 separation of ChimeraXManager, pull up of... tree | commitdiff
2020-06-23 gmungocJAL-3518 pull up closeViewer() and external viewer... tree | commitdiff
2020-06-01 gmungocJAL-3518 more test coverage for structure commands tree | commitdiff
2020-05-29 gmungocJAL-2422 test updated tree | commitdiff
2020-05-29 gmungocMerge branch 'feature/JAL-3551Pymol' into develop tree | commitdiff
2020-05-29 gmungocJAL-3551 null pointer defence while structure files... feature/JAL-3551Pymol tree | commitdiff
2020-05-28 gmungocJAL-3551 corrected Pymol open session command tree | commitdiff
2020-05-28 gmungocJAL-2422 correct ChimeraX save/open session commands... tree | commitdiff
2020-05-26 gmungocJAL-3624 log when SIFTS mapping fails tree | commitdiff
2020-05-26 gmungocMerge branch 'feature/JAL-3624siftsInJS' into develop tree | commitdiff
2020-05-26 gmungocJAL-1761 pattern for structure viewer construction... tree | commitdiff
2020-05-24 Jim ProcterJAL-3407 redact Java 8 incompatible '<>' with anonymous... tree | commitdiff
2020-05-21 gmungocJAL-3551 copy Jalview features to Pymol 'p' (with pull... tree | commitdiff
2020-05-21 gmungocJAL-2422 highlight ChimeraX selection (ChimeraX-1.0... tree | commitdiff
2020-05-20 gmungocJAL-3626 use Viewer.scriptWait() to send Jmol commands... tree | commitdiff
2020-05-19 gmungocJAL-3621 corrected sequence feature sort and test tree | commitdiff
2020-05-19 gmungocMerge branch 'develop' into feature/JAL-3551Pymol tree | commitdiff
2020-05-19 gmungocJAL-3624 use temp file for SIFT download in JS, correct... feature/JAL-3624siftsInJS tree | commitdiff
2020-05-18 gmungocJAL-3463 avoid Thread.sleep() as not supported in SwingJS tree | commitdiff
2020-05-18 gmungocJAL-3621 update to intervalstore v1.1 tree | commitdiff
2020-05-18 gmungocMerge branch 'Jalview-JS/develop' into develop tree | commitdiff
2020-05-18 gmungocJAL-3613 remove debug code committed in error tree | commitdiff
2020-05-15 gmungocJAL-3619 default silently to Jmol if viewerType absent... tree | commitdiff
2020-05-15 gmungocJAL-3551 pull up Close Viewer dialog to base class tree | commitdiff
2020-05-15 gmungocMerge branch 'feature/JAL-3551Pymol' into feature/JAL... tree | commitdiff
2020-05-15 gmungocJAL-3551 raise label on ('highlight') structure residue... tree | commitdiff
2020-05-12 gmungocJAL-3518 tidy method, remove obsolete comment tree | commitdiff
2020-05-12 gmungocJAL-3518 failsafe check for null Jmol filename while... tree | commitdiff
2020-05-11 gmungocJAL-3551 concatenate colour by sequence commands for... tree | commitdiff
2020-05-11 gmungocJAL-2422 JAL-3551 viewer text/variables generalised... tree | commitdiff
2020-05-11 gmungocJAL-2422 ChimeraX paths (versions up to 1.0) added... tree | commitdiff
2020-05-11 gmungocJAL-1333 additional Chimera versions for Windows instal... tree | commitdiff
2020-05-11 gmungocJAL-2422 restore saved ChimeraX session from project tree | commitdiff
2020-05-01 gmungocJAL-3613 check sequence overlap when matching search... tree | commitdiff
2020-04-30 gmungocJAL-3551 save structure viewer session refactorings... tree | commitdiff
2020-04-30 gmungocJAL-3551 tidied error handling for HTTP request tree | commitdiff
2020-04-25 gmungocMerge branch 'develop' into feature/JAL-3551Pymol tree | commitdiff
2020-04-21 Jim ProcterJAL-3407 add GPL license to Jalview source files tree | commitdiff
2020-04-21 Jim ProcterMerge branch 'bug/JAL-3574filterByPOS' into documentati... tree | commitdiff
2020-04-21 Jim ProcterMerge branch 'bug/JAL-3567virtualFeatureCoordinates... tree | commitdiff
2020-04-21 Jim ProcterJAL-367 code tidy tree | commitdiff
2020-04-21 Jim ProcterJAL-3567 translated rather than imputed peptide tree | commitdiff
2020-04-21 gmungocJAL-3603 load annotation file from RELATIVE_URL in... tree | commitdiff
2020-04-17 gmungocJAL-3567 unit tests for linked feature tooltips tree | commitdiff
2020-04-16 BobHansonJAL-3587 Load Project bug tree | commitdiff
2020-04-16 gmungocJAL-3567 adjust layout of linked feature report, unit... tree | commitdiff
2020-04-16 gmungocJAL-3567 added 'imputed by Jalview' to protein conseque... tree | commitdiff
2020-04-16 gmungocJAL-3567 report mapped location for virtual features... tree | commitdiff
2020-04-14 Jim ProcterMerge branch 'bug/JAL-3529_uniprotidsinstockholm' into... tree | commitdiff
2020-04-14 gmungocJAL-3583 remove debug logging, Javadoc added tree | commitdiff
2020-04-13 gmungocJAL-3574 Matcher with integer/long value pattern (e... tree | commitdiff
2020-04-12 gmungocJAL-3596 change redacted tree | commitdiff
2020-04-12 gmungocJAL-3596 don't draw text over features if Show Text... tree | commitdiff
2020-04-12 gmungocJAL-3583 consistent last[Formatted]Tooltip, show once... tree | commitdiff
2020-04-08 BobHansonJAL-3253 merge of new SwingJS api tree | commitdiff
2020-04-07 soaresmerge from develop: Most of the changes tree | commitdiff
2020-04-07 BobHansonJAL-3589 (old Platform) fix for Jalvew-JS/develop only. tree | commitdiff
2020-04-07 gmungocJAL-3210 fudge for JalviewJS to avoid IntervalStore... tree | commitdiff
2020-04-06 Jim ProcterJAL-3407 redact java 8 incompatible type inference tree | commitdiff
2020-04-06 gmungocJAL-3581 no hidden sequence marker if hidden markers... tree | commitdiff
2020-04-06 gmungocJAL-3581 no hidden sequence marker if hidden markers... tree | commitdiff
2020-04-06 gmungocMerge branch 'develop' into Jalview-JS/develop tree | commitdiff
2020-04-06 gmungocJAL-3579 no Feature Editor if features not shown tree | commitdiff
2020-03-31 gmungocJAL-3210 JAL-3130 merge changes to JSON processing tree | commitdiff
2020-03-31 gmungocMerge branch 'develop' into Jalview-JS/develop tree | commitdiff
2020-03-30 Jim ProcterJAL-3407 JAL-3130 back out java 9+ syntax that breaks... tree | commitdiff
2020-03-30 gmungocJAL-3210 debug logging commented out tree | commitdiff
2020-03-30 gmungocMerge branch 'develop' into Jalview-JS/develop tree | commitdiff
2020-03-20 Jim ProcterJAL-3549 javadoc tree | commitdiff
2020-03-19 gmungocJAL-3305 don't propagate an empty SelectionGroup to... tree | commitdiff
2020-03-16 gmungocJAL-3551 tidying, improved commands, fix Jmol model... tree | commitdiff
2020-03-16 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... tree | commitdiff
2020-03-16 gmungocJAL-3551 the correct PyMOL colour by chain command tree | commitdiff
2020-03-13 gmungocJAL-3551 working proof of concept of Jalview driving... tree | commitdiff
2020-03-09 gmungocMerge branch 'develop' into feature/JAL-2422ChimeraX tree | commitdiff
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