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JAL-2931 patch IA paths for new build box
[jalview.git] / test /
2018-05-07 Jim ProcterJAL-2321 patch test to ensure structures are actually... patch/JAL-2321_addsecstrForDroppedPDBFile tree | commitdiff
2018-05-07 Jim ProcterJAL-2906 apply GPLv3 license source tree | commitdiff
2018-04-25 Jim ProcterMerge branch 'features/JAL-2944_openStructuresInSelecte... tree | commitdiff
2018-04-23 gmungocJAL-2952 set negative TempFactor values as AlignmentAnn... tree | commitdiff
2018-04-18 gmungocJAL-2593 render 'duplicate' features if transparency... tree | commitdiff
2018-04-12 gmungocJAL-2223 don't add duplicate mappings to StructureSelec... tree | commitdiff
2018-04-12 gmungocJAL-2944 tidies for review comments tree | commitdiff
2018-04-06 Jim Procterfailing test for JAL-2223 tree | commitdiff
2018-04-05 Jim ProcterJAL-2945 failing test for structure mapping tree | commitdiff
2018-04-05 Jim ProcterJAL-2945 formatting tree | commitdiff
2018-03-22 gmungocJAL-2929 unit test, tidy unused/unneeded fields/parameters tree | commitdiff
2018-03-21 Jim ProcterJAL-2754 don’t use deprecated api for getting font... tree | commitdiff
2018-03-15 gmungocJAL-2893 enabling Get Crossreferences to ENSEMBLGENOMES tree | commitdiff
2018-03-08 gmungocJAL-2885 tests updated for code changes tree | commitdiff
2018-02-27 Jim ProcterMerge branch 'feature/JAL-2759' into merge/JAL-2759_2104 tree | commitdiff
2018-02-23 Jim ProcterMerge branch 'features/JAL-2885UniprotHttps' into relea... tree | commitdiff
2018-02-22 Jim ProcterMerge branch 'bug/JAL-2666' into releases/Release_2_10_... tree | commitdiff
2018-02-13 Jim ProcterJAL-2780 scan all test IDs before testing and reporting... bugs/JAL-2780_JAL-2781_pdbnegativenums tree | commitdiff
2018-02-13 Jim ProcterJAL-2780 SequenceI.findFeatures takes column numbers... tree | commitdiff
2018-02-13 Jim ProcterJAL-2781 ensure Trim is disabled before test starts tree | commitdiff
2018-02-13 Jim ProcterJAL-2781 report exactly which residues do not receive... tree | commitdiff
2018-02-12 Jim ProcterJAL-2780 JAL-2781 extra column in mapping array tree | commitdiff
2018-02-12 Jim ProcterJAL-2904 JAL-2780 JAL-2781 update JmolCommandsTest... tree | commitdiff
2018-02-12 Jim ProcterJAL-2780 use value of ’UNASSIGNED’ constant in assert... tree | commitdiff
2018-02-12 Jim ProcterJAL-2904 replaced assert for (getEnd()-getStart()+1... tree | commitdiff
2018-02-11 Jim ProcterJAL-2781 fix test data for full length annotation tree | commitdiff
2018-02-09 gmungocJAL-2789 avoid using transcript (with no UTR) as CDS... bug/JAL-2666 tree | commitdiff
2018-02-07 Jim ProcterJAL-2780 JAL-2781 run sequentially and ensure windows... tree | commitdiff
2018-02-07 Jim ProcterJAL-2780 JAL-2891 clear all windows always beforeTest... tree | commitdiff
2018-02-07 Jim ProcterJAL-2780 JAL-2781 first pass at failing test for incorr... tree | commitdiff
2018-02-07 Jim ProcterJAL-2780 JAL-2781 JAL-2902 refactored helper method... tree | commitdiff
2018-02-06 kiramtMerge branch 'develop' into feature/JAL-2759 feature/JAL-2759 tree | commitdiff
2018-02-05 Jim ProcterJAL-2780 JAL-2781 (failing) test comparing location... tree | commitdiff
2018-02-05 Jim ProcterJAL-2780 JAL-2781 test AlignmentI.findAnnotations locat... tree | commitdiff
2018-02-05 Jim ProcterJAL-2780 JAL-2781 - patch and first test for AlignmentI... tree | commitdiff
2018-02-05 kiramtJAL-2759 Rename getBoundedStartIterator tree | commitdiff
2018-02-05 kiramtJAL-2759 Changes to StartRegionIterator after review tree | commitdiff
2018-01-31 kiramtJAL-2759 Rationalise VisibleColsIterator and HiddenCols... tree | commitdiff
2018-01-31 kiramtJAL-2759 test renaming tree | commitdiff
2018-01-31 kiramtJAL-2759 minor refactor to hiding bitsets tree | commitdiff
2018-01-30 kiramtJAL-2759 Add missing hiddenColumns empty check tree | commitdiff
2018-01-30 kiramtJAL-2759 updateForDeletedRegion no longer needed tree | commitdiff
2018-01-30 kiramtJAL-2759 Rationalising hidden cols cursor, and sorting... tree | commitdiff
2018-01-30 kiramtJAL-2759 Additional tests and tweaks to numColumns... tree | commitdiff
2018-01-30 kiramtJAL-2759 Keep numColumns up to date tree | commitdiff
2018-01-29 kiramtMerge branch 'feature/JAL-2759' of https://source.jalvi... tree | commitdiff
2018-01-29 kiramtJAL-2759 Combine findRegionForColumn code in HiddenColu... tree | commitdiff
2018-01-29 gmungocJAL-1270 testPadGaps() added tree | commitdiff
2018-01-29 kiramtJAL-2759 make a new cursor instead of resetting, update... tree | commitdiff
2018-01-26 Jim ProcterMerge branch 'releases/Release_2_10_3_Branch' into... tree | commitdiff
2018-01-22 kiramtJAL-2579 Moved locateVisibleStartOfSequence to Sequence... tree | commitdiff
2018-01-19 kiramtJAL-2759 Changes to getVisibleSequenceStrings after... tree | commitdiff
2018-01-19 kiramtJAL-2759 Moved propagateInsertions out of HiddenColumns tree | commitdiff
2018-01-19 kiramtJAL-2759 Update to getVisibleStartAndEndIndex after... tree | commitdiff
2018-01-18 kiramtJAL-2759 change subtractVisibleColumns and removal... tree | commitdiff
2018-01-18 kiramtJAL-2759 Updated test tree | commitdiff
2018-01-18 kiramtJAL-2759 unit tests (incomplete) tree | commitdiff
2018-01-17 gmungocJAL-2679 case-insensitive comparison of query and retri... tree | commitdiff
2018-01-16 kiramtJAL-2759 setup hideBitSet over range for hideInsertions tree | commitdiff
2018-01-16 gmungocJAL-2885 uniprot now https, uniprot/ensembl/pfam/xfam... tree | commitdiff
2018-01-16 kiramtJAL-2759 Unit test for PopupMenu hideInsertions code tree | commitdiff
2018-01-16 kiramtJAL-2759 Moved alignment annotation code out of HiddenC... tree | commitdiff
2018-01-15 kiramtJAL-2759 Rename hideInsertionsFor to hideList, after... tree | commitdiff
2018-01-15 kiramtJAL-2759 Refactor of hideInsertionsFor after review tree | commitdiff
2018-01-15 kiramtJAL-2759 Minor doc and naming changes tree | commitdiff
2018-01-15 kiramtJAL-2759 Rename findColumnPosition and adjustForHiddenC... tree | commitdiff
2018-01-15 kiramtJAL-2759 Comments and renaming for has(Many)HiddenColum... tree | commitdiff
2018-01-15 kiramtJAL-2759 Tidy up javadoc and naming in HiddenColumnsCur... tree | commitdiff
2018-01-15 kiramtJAL-2759 Updated HiddenColumnsTest::testIsVisible follo... tree | commitdiff
2018-01-15 kiramtJAL-2759 Update to getHiddenBoundaryRight + unit test... tree | commitdiff
2018-01-12 kiramtJAL-2886 trivial unit test fix tree | commitdiff
2017-12-19 Jim ProcterJAL-2880 disabled non-functional test - Jmol parser... tree | commitdiff
2017-12-01 Jim ProcterMerge branch 'develop' into bugs/JAL-2780_JAL-2781_pdbn... tree | commitdiff
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2859_uniprottowrongpdbid' into... tree | commitdiff
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2740' into develop tree | commitdiff
2017-11-27 Jim ProcterJAL-2859 failing test demonstrating sequences with... tree | commitdiff
2017-11-22 kiramtJAL-2759 performance improvements to hideColumns tree | commitdiff
2017-11-22 kiramtJAL-2759 HiddenColumns test polishing tree | commitdiff
2017-11-21 kiramtJAL-2759 corrected old getVisibleBlocksIterator calls... tree | commitdiff
2017-11-21 kiramtJAL-2759 Remove getVisibleBlocksIterator call tree | commitdiff
2017-11-21 kiramtMerge branch 'develop' into feature/JAL-2759 tree | commitdiff
2017-11-21 kiramtJAL-2759 BoundedStartRegionIterator test tree | commitdiff
2017-11-21 kiramtJAL-2759 unit tests for VisibleContigsIterator tree | commitdiff
2017-11-20 kiramtJAL-2759 improvements to speed up synchronisation;... tree | commitdiff
2017-11-17 Jim ProcterMerge branch 'bug/JAL-2831' into develop tree | commitdiff
2017-11-17 kiramtJAL-2759 tidy tree | commitdiff
2017-11-17 kiramtJAL-2759 Update tests tree | commitdiff
2017-11-17 kiramtJAL-2759 Convert reveal to use cursor tree | commitdiff
2017-11-17 kiramtJAL-2759 HiddenColumnsCursor tests tree | commitdiff
2017-11-16 Jim ProcterMerge branch 'bug/JAL-2829deleteCharsWithGaps' into... tree | commitdiff
2017-11-14 kiramtJAL-2831 tidies and tests tree | commitdiff
2017-11-14 Jim ProcterJAL-2758 update uniprot retrieval test tree | commitdiff
2017-11-14 kiramtMerge branch 'imp/JAL-2774' into bug/JAL-2831 tree | commitdiff
2017-11-13 Jim ProcterMerge branch 'features/JAL-2758_shorteruniprot' into... tree | commitdiff
2017-11-13 kiramtJAL-2759 convert findColumnPosition to use cursor tree | commitdiff
2017-11-10 gmungocJAL-2829 fixes and unit tests bug/JAL-2829deleteCharsWithGaps tree | commitdiff
2017-11-10 gmungocJAL-2829 unit tests for failing cases tree | commitdiff
2017-11-08 kiramtMerge branch 'develop' into feature/JAL-2759 tree | commitdiff
2017-11-08 Jim ProcterMerge branch 'develop' into bug/JAL-2225mapMultipleChains tree | commitdiff
2017-10-31 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
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