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Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git] / test /
2023-05-18 James ProcterJAL-4134 column grouping model and methods moved to... tree | commitdiff
2023-05-18 Ben SoaresJAL-629 Added 'Type' to args and argvalues tree | commitdiff
2023-05-17 Ben SoaresJAL-629 Tidy up tests and replaced methods before merge... tree | commitdiff
2023-05-17 Ben SoaresJAL-629 delete stray files tree | commitdiff
2023-05-17 Ben SoaresMerge branch 'develop' into features/r2_11_2_alphafold... tree | commitdiff
2023-05-17 James ProcterJAL-4184 failing test for description export and re... tree | commitdiff
2023-05-15 James ProcterJAL-4182 failing test tree | commitdiff
2023-05-14 James ProcterJAL-2349 fix up tests for Java 11 compatibility and... tree | commitdiff
2023-05-14 James ProcterJAL-4134 add tree distance engine test to functional tree | commitdiff
2023-05-14 James ProcterJAL-2349 store/restore mappable contact matrix in proje... tree | commitdiff
2023-05-13 James ProcterJAL-2349 JAL-3855 PAE tests covers ContactListI.getMapp... tree | commitdiff
2023-05-12 James ProcterJAL-2349 allow PAE or other contact matrices to hold... tree | commitdiff
2023-05-12 Ben SoaresJAL-629 extra test for --output open*.ext when used... tree | commitdiff
2023-05-12 Ben SoaresJAL-629 Added --opened arg which is like limiting ... tree | commitdiff
2023-05-11 Ben SoaresJAL-629 Added linkedId to ArgValuesMap for reference... tree | commitdiff
2023-05-10 Ben SoaresJAL-629 More docs. Usage statement. Adjust some logging... tree | commitdiff
2023-05-05 Ben SoaresJAL-629 test fixes tree | commitdiff
2023-05-04 Ben SoaresJAL-629 Moved additional CommandLineOperationsNG tests... tree | commitdiff
2023-05-04 Ben SoaresJAL-629 More NG arguments: --features, --annotations... tree | commitdiff
2023-05-03 Ben SoaresJAL-629 added eps and imagemap. Added --output and... tree | commitdiff
2023-05-02 Ben SoaresJAL-629 Changed --newframe and --allframes to --new... tree | commitdiff
2023-05-01 Ben SoaresJAL-629 real life test for --allframes tree | commitdiff
2023-04-30 Ben SoaresJAL-629 Change behaviour of --open GLOB to increment... tree | commitdiff
2023-04-29 Ben SoaresJAL-629 Added --all arg, [*] linkedId and functionality... tree | commitdiff
2023-04-28 Ben SoaresJAL-629 Fixed the argfile1 after subval separator change tree | commitdiff
2023-04-28 Ben SoaresJAL-629 Fixed the argfiletests after subval separator... tree | commitdiff
2023-04-28 Ben SoaresJAL-629 Fixed the argfile after subval separator change tree | commitdiff
2023-04-28 Ben SoaresJAL-629 Change colour scheme shortnames to something... tree | commitdiff
2023-04-27 Ben SoaresJAL-629 changed args in tests tree | commitdiff
2023-04-26 Ben SoaresJAL-629 shorter wait times for this test tree | commitdiff
2023-04-26 Ben SoaresJAL-629 JAL-4167 Added args to tests. Fixed potential... tree | commitdiff
2023-04-24 Ben SoaresJAL-629 Add --nowebdiscovery. Distinguish arg=="open... tree | commitdiff
2023-04-24 Ben SoaresJAL-629 Put commandsTest.jvprops in the right place tree | commitdiff
2023-04-24 Ben SoaresJAL-629 loaded props from arg in failing build server... tree | commitdiff
2023-04-24 Ben SoaresJAL-629 Dynamic sleep in test, more diagnostics tree | commitdiff
2023-04-24 Ben SoaresJAL-629 Dynamic sleep in test tree | commitdiff
2023-04-24 Ben SoaresJAL-629 Move diagnostics to the right place tree | commitdiff
2023-04-24 Ben SoaresJAL-629 Diagnosis output for failing test tree | commitdiff
2023-04-24 Ben SoaresJAL-629 Count VISIBLE annotations for tests tree | commitdiff
2023-04-24 Ben SoaresJAL-629 attempt to fix tests on build server (more... tree | commitdiff
2023-04-23 Ben SoaresJAL-629 single threaded test for viewer window for... tree | commitdiff
2023-04-23 Ben SoaresJAL-629 even longer wait for viewer window for build... tree | commitdiff
2023-04-23 Ben SoaresJAL-629 longer wait for viewer window for build server tree | commitdiff
2023-04-23 Ben SoaresJAL-629 Change --open to --append and --opennew to... tree | commitdiff
2023-04-22 Ben SoaresJAL-629 Test and fix --annotation --ssannotation args... tree | commitdiff
2023-04-12 Ben SoaresMerge branch 'develop' into features/r2_11_2_alphafold... tree | commitdiff
2023-04-12 Ben SoaresJAL-629 mild improvement to test tree | commitdiff
2023-04-12 Ben SoaresJAL-629 Fixed ~ based test for build server tree | commitdiff
2023-04-12 Ben SoaresJAL-629 Add substituteHomeDir to getDirname(). Tighten... tree | commitdiff
2023-04-12 Ben SoaresJAL-629 Put old -props back as will now use old parser tree | commitdiff
2023-04-12 Ben SoaresJAL-629 Fix non-multi string bootstrap arg bug. tree | commitdiff
2023-04-12 Ben SoaresJAL-629 setprop test disabled as feature is disabled tree | commitdiff
2023-04-05 Ben SoaresJAL-629 Tests for FileUtils. Tidying counter substituti... tree | commitdiff
2023-04-04 Ben SoaresJAL-629 --initsubstitutions as a bootstrap arg, new... tree | commitdiff
2023-04-03 Ben SoaresJAL-629 sort files from java glob for predictability... tree | commitdiff
2023-04-03 Ben SoaresJAL-629 Removed --headless to fix CommandsTest tree | commitdiff
2023-04-03 Ben SoaresJAL-629 added setprop. More filename based substitution... tree | commitdiff
2023-03-30 Ben SoaresJAL-629 More extensive tests with real files being... tree | commitdiff
2023-03-29 Ben SoaresJAL-629 extensive tests for ArgParser features tree | commitdiff
2023-03-29 Ben SoaresJAL-629 Added --opennew --nonews --nosplash. Added... tree | commitdiff
2023-03-24 James ProcterMerge branch 'develop' into features/JAL-4134_treeviewe... tree | commitdiff
2023-03-24 Ben SoaresMerge branch 'develop' into features/r2_11_2_alphafold... tree | commitdiff
2023-03-24 Ben SoaresJAL-629 Test tidyup tree | commitdiff
2023-03-23 Ben SoaresJAL-629 don't clear appProps in tests tree | commitdiff
2023-03-23 Ben SoaresJAL-629 refactor ArgParser and helper classes all to... tree | commitdiff
2023-03-21 Ben SoaresJAL-629 null checks for Desktop.instance.closeAll(... tree | commitdiff
2023-03-20 James ProcterJAL-4134 override default hasTree so PAE tree is saved! tree | commitdiff
2023-03-20 James ProcterJAL-4153 longer Thread.sleep() calls in the hope that... tree | commitdiff
2023-03-20 James ProcterMerge branch 'develop' into features/JAL-4134_treeviewe... tree | commitdiff
2023-03-20 James ProcterJAL-4150 test and quick patch copying code from AlignFr... tree | commitdiff
2023-03-20 James ProcterJAL-2349 test TODOs tree | commitdiff
2023-03-20 James ProcterJAL-2349 fix off by one when resolving columns for... tree | commitdiff
2023-03-17 James ProcterJAL-4134 store/restore Newick tree for PAE annotation row tree | commitdiff
2023-03-16 Ben SoaresJAL-629 fixed a test failing when run without a Jalview... tree | commitdiff
2023-03-15 James ProcterJAL-4091 JAL-629 ‘Add Reference Annotations’ takes... tree | commitdiff
2023-03-15 James ProcterJAL-4134 JAL-3855 store/restore groups, tree and thresh... tree | commitdiff
2023-03-15 Ben SoaresJAL-3833 fixed HiDPI test for macOS tree | commitdiff
2023-03-15 Ben SoaresJAL-629 Commands more objecty, less classy. FileLoader... tree | commitdiff
2023-03-13 Ben SoaresJAL-629 teardown in CommandsTest tree | commitdiff
2023-03-11 Ben SoaresJAL-629 start of CommandsTest. More ArgParserTests. tree | commitdiff
2023-03-10 Ben SoaresJAL-629 start of tests and more examples tree | commitdiff
2023-03-09 Ben SoaresJAL-629 start of tests tree | commitdiff
2023-03-08 James ProcterMerge branch 'features/r2_11_2_alphafold/JAL-629' into... tree | commitdiff
2023-03-02 Ben SoaresJAL-629 Some refactoring to allow more flexible use... tree | commitdiff
2023-02-28 Ben SoaresJAL-629 Firm up bootstrapArgs. Correct '-colour' in... tree | commitdiff
2023-02-27 James ProcterJAL-4134 allow tree groups to be stored/recovered on... tree | commitdiff
2023-02-27 Ben SoaresJAL-629 JAL-4124 JAL-3855 remove deleted debugging... tree | commitdiff
2023-02-27 James ProcterMerge branch 'develop' into features/JAL-4134_treeviewe... tree | commitdiff
2023-02-24 James ProcterJAL-629 JAL-4124 JAL-3855 test to check we can import... tree | commitdiff
2023-02-24 James ProcterMerge branch 'features/r2_11_2_alphafold/JAL-629' into... features/JAL-3858_PAEsInProjects tree | commitdiff
2023-02-24 Ben SoaresJAL-629 better test fixes. --props=... instead of ... tree | commitdiff
2023-02-23 Ben SoaresJAL-629 test fixing tree | commitdiff
2023-02-23 James ProcterJAL-4134 group columns using a tree cut - seems to... tree | commitdiff
2023-02-23 Ben SoaresJAL-629 Add debug messages for more failing tests tree | commitdiff
2023-02-23 James ProcterJAL-4134 - brutal hack to build a tree clustering colum... tree | commitdiff
2023-02-23 Ben SoaresJAL-629 fixed a Log4j test by adding --debug arg tree | commitdiff
2023-02-23 James ProcterJAL-4134 - refactor tree calculation code to work with... tree | commitdiff
2023-02-22 James ProcterJAL-3858 persist PAE matrix (only so far) as serialised... tree | commitdiff
2023-02-22 James ProcterJAL-1551 source formatting tree | commitdiff
2023-02-22 James ProcterJAL-3858 simple test for PAE matrix recovery tree | commitdiff
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