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Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git] / utils /
2023-11-30 Ben SoaresJAL-4344 careful application of -Djava.awt.headless... tree | commitdiff
2023-11-16 Ben SoaresJAL-4243 Updated bio.tools record for 2.11.3.0 tree | commitdiff
2023-11-13 James ProcterJAL-4090 JAL-1551 source license tree | commitdiff
2023-08-31 Ben SoaresJAL-3830 Remove dock icon for -h too improvement/JAL-3830_remove_dock_icon_in_headless_mode tree | commitdiff
2023-08-17 Ben SoaresJAL-3830 JAL-4160 Remove --noheadless as --gui does... tree | commitdiff
2023-08-16 Ben SoaresJAL-3830 JAL-3421 Conda launch script for 2.11.3 and... tree | commitdiff
2023-08-16 Ben SoaresMerge branch 'develop' into improvement/JAL-3830_remove... tree | commitdiff
2023-08-16 Ben SoaresJAL-4160 JAL-3830 Improvements to the jalview.sh bash... tree | commitdiff
2023-07-28 Ben SoaresJAL-4064 Added more recognisable display names to macOS... tree | commitdiff
2023-07-22 James ProcterJAL-4243 Jalview 2.11.2.7’s biotool record as JSON... tree | commitdiff
2023-06-16 Ben SoaresJAL-3830 Take account of --gui taking precedence over... tree | commitdiff
2023-06-16 Ben SoaresJAL-3830 Look for --headless mode and add -Djava.awt... tree | commitdiff
2023-06-08 Ben SoaresJAL-3599 gradle tasks to test JalviewJS launches in... tree | commitdiff
2023-06-02 Ben SoaresJAL-3521 Updated debian build.gradle in utils/debian... tree | commitdiff
2023-05-25 Ben SoaresJAL-3416 JAL-3820 FlatLaf default for everyone, includi... tree | commitdiff
2023-05-25 Ben SoaresJAL-3416 better path name tree | commitdiff
2023-05-25 Ben SoaresJAL-3820 JAL-3830 improvements to script launching... tree | commitdiff
2023-05-25 Ben SoaresJAL-3820 Create and use 'Jalview app' symblinks to... tree | commitdiff
2023-05-20 Ben SoaresJAL-4187 JAL-629 JAL-3830 adjustments to Cygwin and... tree | commitdiff
2023-05-19 Ben SoaresJAL-4187 JAL-629 JAL-3830 Fix ArgParser to check for... tree | commitdiff
2023-05-19 Ben SoaresJAL-629 Updated debian helpers for new command line tree | commitdiff
2023-05-19 Ben SoaresJAL-629 Updated launching scripts to 1) not insert... tree | commitdiff
2023-05-13 Ben SoaresJAL-629 launcher shell script uses jalview.bin.Launcher... tree | commitdiff
2023-04-22 Ben SoaresJAL-629 Test and fix --annotation --ssannotation args... tree | commitdiff
2023-02-22 Ben SoaresMerge branch 'develop' into features/r2_11_2_alphafold... tree | commitdiff
2023-02-22 Ben SoaresJAL-4064 JAL-4054 Corrected the tgz top-level dir from... tree | commitdiff
2023-02-22 Ben SoaresMerge branch 'develop' into features/r2_11_2_alphafold... tree | commitdiff
2023-02-20 Ben SoaresJAL-4064 JAL-4054 Correct names of mac arch installer... tree | commitdiff
2023-02-20 Ben SoaresMerge branch 'develop' into improvement/JAL-4111_suffix... improvement/JAL-4111_suffixed_DEVELOP_channels tree | commitdiff
2023-02-16 James ProcterMerge branch 'features/r2_11_2_alphafold/JAL-629' into... tree | commitdiff
2023-01-26 Ben SoaresJAL-629 helper eclipse CLI run tree | commitdiff
2023-01-06 Ben SoaresJAL-3416 Fix file permissions on bundled macOS JREs tree | commitdiff
2023-01-06 Ben SoaresJAL-4111 Added commit and date text to splashscreens... tree | commitdiff
2023-01-05 Ben SoaresJAL-4111 improvement to convert -draw argument tree | commitdiff
2023-01-05 Ben SoaresJAL-4111 Use ImageMagick to add commit and build time... tree | commitdiff
2023-01-05 Ben SoaresJAL-4111 Fixed channel.props to allow replacement of... tree | commitdiff
2023-01-05 Benedict Soares... JAL-4111 fixed DMG background image for generic Develop... tree | commitdiff
2022-12-22 Ben SoaresJAL-4111 Allow -PCHANNEL=DEVELOP-version for new appbas... tree | commitdiff
2022-11-04 Ben SoaresJAL-4064 JAL-4054 Combined install4j10 template with... improvement/JAL-4064_Addition_of_macOS_AARCH64_native_DMG tree | commitdiff
2022-11-04 Ben SoaresJAL-4054 Altered file association templates and generat... tree | commitdiff
2022-11-01 Ben SoaresJAL-4064 re-added bundled macOS JREs as Filesets, which... tree | commitdiff
2022-11-01 Ben SoaresJAL-4064 Cleaned up file sets in install4j template... tree | commitdiff
2022-11-01 Ben SoaresJAL-4064 Download JRE/JDKs from Azul if not os/arch... tree | commitdiff
2022-05-09 Ben SoaresJAL-4004 Temporary mechanism to add JalviewJS link... tree | commitdiff
2022-05-09 Ben SoaresJAL-3989 Code tidying, added JVL_HEADER for older versi... tree | commitdiff
2022-05-05 Ben SoaresJAL-4004 Now generating hugo files from help/markdown/... tree | commitdiff
2022-05-03 Ben SoaresJAL-3989 improved parsing and formatting now using... tree | commitdiff
2022-04-27 Ben SoaresJAL-3989 Populate template files for hugo build: archiv... tree | commitdiff
2022-04-25 Ben SoaresJAL-3989 moved getdown build dirs to build/website... tree | commitdiff
2022-03-31 Ben SoaresMerge branch 'task/JAL-3553_improved_install4j_output_t... tree | commitdiff
2022-03-18 Ben SoaresJAL-3978 New tasks to build archive 'old' dir with... tree | commitdiff
2022-03-16 Ben SoaresJAL-3978 task stub and getdown splash screens tree | commitdiff
2022-03-10 Jalview Developmen... JAL-3796 include entitlements when codesigning for... tree | commitdiff
2022-03-02 Ben SoaresJAL-3962 Added jre/bin and dist folders to the native... tree | commitdiff
2022-03-02 Ben SoaresJAL-3130 updated download_jres.sh tree | commitdiff
2022-02-23 Jalview Developmen... JAL-3796 additional steps for notarization tree | commitdiff
2022-01-29 Ben SoaresJAL-3830 JAL-3420 added new jvl_file to install4j9... tree | commitdiff
2022-01-29 Ben SoaresMerge branch 'develop' into improvement/JAL-3830_instal... tree | commitdiff
2022-01-28 Ben Soaresnew jvl_file svg, png, ico and icns files, and changed... tree | commitdiff
2022-01-27 Jim ProcterMerge branch 'bug/JAL-3633_read_proxy_settings_from_jal... tree | commitdiff
2021-12-07 Ben SoaresJAL-3930 Added a customizedId="JALVIEW" to launcher... tree | commitdiff
2021-12-07 Ben SoaresJAL-3930 Added a customizedId="JALVIEW" to launcher... tree | commitdiff
2021-11-29 Ben SoaresJAL-3594 correct Jalview Develop logo SVG added in... tree | commitdiff
2021-11-19 Ben SoaresJAL-3553 now creating a json file for use on website... tree | commitdiff
2021-11-16 Ben SoaresJAL-3553 added customized labels for install4j output.txt tree | commitdiff
2021-11-16 Ben SoaresJAL-3553 improve the labels in install4j's output.txt... tree | commitdiff
2021-11-01 Ben SoaresJAL-3907 added creation of symbolic links to workaround... tree | commitdiff
2021-10-28 Ben SoaresJAL-3830 forgot to uncheck this tree | commitdiff
2021-10-28 Ben SoaresJAL-3830 polished setup app for macos tree | commitdiff
2021-10-27 Ben SoaresJAL-3830 quick fix to installer text tree | commitdiff
2021-10-27 Ben SoaresJAL-3830 install4j9 tries to parse and can't cope with... tree | commitdiff
2021-10-26 Ben SoaresJAL-3830 Added steps for install4j9 to create macOS... tree | commitdiff
2021-10-26 Ben SoaresJAL-3907 adjusted download_jdks.sh and download_jres... tree | commitdiff
2021-10-01 Ben SoaresMerge branch 'develop' into improvement/JAL-3594_logos_... improvement/JAL-3594_logos_for_jalview_test tree | commitdiff
2021-10-01 Ben SoaresJAL-3594 New Jalview Test logos and .icns/.ico creation... tree | commitdiff
2021-09-30 Ben SoaresJAL-3594 Changed logo for Jalview Test tree | commitdiff
2021-09-30 Ben SoaresJAL-1260 Added .gbk to GenBank extensions. Added GenBa... tree | commitdiff
2021-09-27 Jim ProcterJAL-3746 update the example corefile for jalviewjs tree | commitdiff
2021-09-21 Ben SoaresJAL-3521 'Debian-safe' version of minimal build.gradle... tree | commitdiff
2021-09-20 Ben SoaresJAL-3521 Created a patch file to transform build.gradle... tree | commitdiff
2021-09-20 Ben SoaresJAL-3521 working minimal build.gradle for debian and... merge/develop_JAL-3521_minimal_build.gradle_file tree | commitdiff
2021-09-20 Ben SoaresJAL-3521 not quite working minimal build.gradle for... tree | commitdiff
2021-09-14 Jim ProcterJAL-3815 default /etc/jalview_properties under utils... tree | commitdiff
2021-09-14 Ben SoaresJAL-3521 Adjusted wrapper shell script and .desktop... tree | commitdiff
2021-09-14 Ben SoaresJAL-3521 High quality file icons for jalview associated... tree | commitdiff
2021-09-12 Jim ProcterJAL-3829 upgrade Jmol to 14.31.53, SwingJS-JSMol to... tree | commitdiff
2021-06-18 Ben SoaresJAL-3594 Updated the Jalview Develop getdown splashscre... tree | commitdiff
2021-04-13 Ben SoaresJAL-3830 Improved jalview.bat to find either pwsh.exe... tree | commitdiff
2021-03-31 Ben SoaresJAL-3830 BAT file wrapper around powershell, so jalview... tree | commitdiff
2021-03-30 Ben SoaresJAL-3830 Follow all SymbolicLinks in Windows powershell... tree | commitdiff
2021-03-26 Ben SoaresJAL-3830 delete channel.props and channel.propsv when... tree | commitdiff
2021-03-24 Ben SoaresJAL-3830 Moved wrappers to bin/jalview.* and make a... tree | commitdiff
2021-03-19 Ben SoaresJAL-3594 Making default .jalview_properties file separa... tree | commitdiff
2021-03-17 Ben SoaresJAL-3830 Allow paths to start with '~'. Make path check... tree | commitdiff
2021-03-17 Ben SoaresJAL-3830 Now using a single universal bash script ... tree | commitdiff
2021-03-17 Ben SoaresJAL-3830 add the windows bash script to getdown files... tree | commitdiff
2021-03-17 Ben SoaresJAL-3830 bash script that works in both cygwin and... tree | commitdiff
2021-03-15 Ben SoaresJAL-3830 Delete wrapper scripts and getdown *v files... tree | commitdiff
2021-03-15 Ben SoaresJAL-3830 powershell wrapper tested on linux, macos... tree | commitdiff
2021-03-14 Ben SoaresJAL-3830 minor fix in powershell wrapper tree | commitdiff
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