jalview.git
5 years agoMerge remote-tracking branch 'origin/bug/JAL-3002fastPaintWrapped' into develop
gmungoc [Tue, 5 Mar 2019 11:20:44 +0000 (11:20 +0000)]
Merge remote-tracking branch 'origin/bug/JAL-3002fastPaintWrapped' into develop

5 years agoJAL-3049 JAL-3032 tidy/i18n code, remove redundant tooltip registration
gmungoc [Wed, 22 Aug 2018 10:31:04 +0000 (11:31 +0100)]
JAL-3049 JAL-3032 tidy/i18n code, remove redundant tooltip registration

Conflicts:
resources/lang/Messages.properties
resources/lang/Messages_es.properties
src/jalview/gui/FeatureSettings.java

5 years agoJAL-3049 redo (part of) commit 92bc328
gmungoc [Tue, 5 Mar 2019 10:26:53 +0000 (10:26 +0000)]
JAL-3049 redo (part of) commit 92bc328

5 years agoJAL-3054 small y-overlap of tooltip and cell leads the eye better
gmungoc [Fri, 6 Jul 2018 09:55:46 +0000 (10:55 +0100)]
JAL-3054 small y-overlap of tooltip and cell leads the eye better

5 years agoMerge remote-tracking branch 'origin/bug/JAL-3049colourCellTooltip' into
gmungoc [Tue, 5 Mar 2019 09:01:48 +0000 (09:01 +0000)]
Merge remote-tracking branch 'origin/bug/JAL-3049colourCellTooltip' into
merge/JAL-3049

Conflicts:
src/jalview/api/FeatureColourI.java
src/jalview/schemes/FeatureColour.java
test/jalview/schemes/FeatureColourTest.java

5 years agoMerge branch 'bug/JAL-3072scrollThread' into merge/JAL-3072_3073
gmungoc [Mon, 4 Mar 2019 17:06:13 +0000 (17:06 +0000)]
Merge branch 'bug/JAL-3072scrollThread' into merge/JAL-3072_3073

Conflicts:
src/jalview/datamodel/Alignment.java
src/jalview/gui/ScalePanel.java
src/jalview/gui/SeqPanel.java

5 years agoMerge remote-tracking branch 'origin/bug/JAL-3082selectRegex' into merge/JAL-3082
gmungoc [Mon, 4 Mar 2019 16:44:19 +0000 (16:44 +0000)]
Merge remote-tracking branch 'origin/bug/JAL-3082selectRegex' into merge/JAL-3082

5 years agoJAL-3206 avoid divide by zero when threshold is graphMin / graphMax
gmungoc [Mon, 4 Mar 2019 16:22:40 +0000 (16:22 +0000)]
JAL-3206 avoid divide by zero when threshold is graphMin / graphMax

5 years agoMerge branch 'bug/JAL-3099alignmentVisibleWidth' into merge/JAL-3099
gmungoc [Mon, 4 Mar 2019 12:30:09 +0000 (12:30 +0000)]
Merge branch 'bug/JAL-3099alignmentVisibleWidth' into merge/JAL-3099

Conflicts:
src/jalview/gui/AlignmentPanel.java
src/jalview/gui/IdCanvas.java
test/jalview/datamodel/AlignmentTest.java

5 years agoMerge remote-tracking branch 'origin/tasks/JAL-3035_remove_dasobert_dependency' into...
gmungoc [Mon, 4 Mar 2019 11:47:14 +0000 (11:47 +0000)]
Merge remote-tracking branch 'origin/tasks/JAL-3035_remove_dasobert_dependency' into merge/JAL-3035

5 years agoMerge branch 'bug/JAL-3120restoreFeatureColour' into merge/JAL-3120
gmungoc [Mon, 4 Mar 2019 10:54:27 +0000 (10:54 +0000)]
Merge branch 'bug/JAL-3120restoreFeatureColour' into merge/JAL-3120

Conflicts:
src/jalview/gui/Jalview2XML.java
test/jalview/io/Jalview2xmlTests.java

5 years agoMerge branch 'bug/JAL-2791exportFilteredFeature' into merge/JAL-2791
gmungoc [Fri, 1 Mar 2019 15:35:54 +0000 (15:35 +0000)]
Merge branch 'bug/JAL-2791exportFilteredFeature' into merge/JAL-2791

5 years agoMerge branch 'feature/JAL-3093wrappedModeTooltips' into merge/JAL-3093_JAL-3132
gmungoc [Fri, 1 Mar 2019 15:12:06 +0000 (15:12 +0000)]
Merge branch 'feature/JAL-3093wrappedModeTooltips' into merge/JAL-3093_JAL-3132

5 years agoJAL-3093 unit test adapts to actual number of annotation rows feature/JAL-3093wrappedModeTooltips
gmungoc [Fri, 1 Mar 2019 15:11:31 +0000 (15:11 +0000)]
JAL-3093 unit test adapts to actual number of annotation rows

5 years agoMerge branch 'feature/JAL-3093wrappedModeTooltips' into
gmungoc [Fri, 1 Mar 2019 14:30:03 +0000 (14:30 +0000)]
Merge branch 'feature/JAL-3093wrappedModeTooltips' into
merge/JAL-3093_JAL-3132

Conflicts:
src/jalview/gui/SeqPanel.java
test/jalview/gui/SeqPanelTest.java

5 years agoMerge branch 'feature/JAL-1244stretchStatusMsg' into merge/JAL-1244
gmungoc [Fri, 1 Mar 2019 12:26:45 +0000 (12:26 +0000)]
Merge branch 'feature/JAL-1244stretchStatusMsg' into merge/JAL-1244

Conflicts:
src/jalview/commands/EditCommand.java

5 years agoMerge branch 'bug/JAL-3139colocatedFeatures' into develop
gmungoc [Fri, 1 Mar 2019 12:12:04 +0000 (12:12 +0000)]
Merge branch 'bug/JAL-3139colocatedFeatures' into develop

5 years agoJAL-3154 disable reorder columns before adding to viewport
gmungoc [Fri, 1 Mar 2019 11:23:39 +0000 (11:23 +0000)]
JAL-3154 disable reorder columns before adding to viewport

5 years agoMerge branch 'bug/JAL-3154tableColumnDrag' into develop
gmungoc [Fri, 1 Mar 2019 11:17:11 +0000 (11:17 +0000)]
Merge branch 'bug/JAL-3154tableColumnDrag' into develop

5 years agoMerge branch 'bug/JAL-3161annotationTooltipRange' into develop
gmungoc [Fri, 1 Mar 2019 11:00:39 +0000 (11:00 +0000)]
Merge branch 'bug/JAL-3161annotationTooltipRange' into develop

5 years agoMerge branch 'bug/JAL-3158selectionBroadcasts' into merge/JAL-3158
gmungoc [Fri, 1 Mar 2019 10:57:17 +0000 (10:57 +0000)]
Merge branch 'bug/JAL-3158selectionBroadcasts' into merge/JAL-3158

5 years agoMerge branch 'bug/JAL-3164complementOverview' into merge/JAL-3164
gmungoc [Fri, 1 Mar 2019 10:07:54 +0000 (10:07 +0000)]
Merge branch 'bug/JAL-3164complementOverview' into merge/JAL-3164

5 years agoMerge branch 'merge/JAL-3140' into develop
gmungoc [Fri, 1 Mar 2019 10:00:28 +0000 (10:00 +0000)]
Merge branch 'merge/JAL-3140' into develop

5 years agoJAL-3140 update for change to SequenceI api
gmungoc [Fri, 1 Mar 2019 09:59:24 +0000 (09:59 +0000)]
JAL-3140 update for change to SequenceI api

5 years agoMerge branch 'feature/intervalStoreJ' into merge/JAL-3140
gmungoc [Fri, 1 Mar 2019 09:41:58 +0000 (09:41 +0000)]
Merge branch 'feature/intervalStoreJ' into merge/JAL-3140

5 years agoJAL-3140 reduced coupling to intervalstore.jar feature/intervalStoreJ
gmungoc [Fri, 1 Mar 2019 09:23:11 +0000 (09:23 +0000)]
JAL-3140 reduced coupling to intervalstore.jar

5 years agoJAL-3140 confine intervalstore imports to jalview.datamodel.features
gmungoc [Thu, 28 Feb 2019 16:41:55 +0000 (16:41 +0000)]
JAL-3140 confine intervalstore imports to jalview.datamodel.features

5 years agoMerge branch 'bug/JAL-2420revealAllMenu' into develop
gmungoc [Thu, 28 Feb 2019 15:59:02 +0000 (15:59 +0000)]
Merge branch 'bug/JAL-2420revealAllMenu' into develop

5 years agoMerge branch 'bug/JAL-3166npeAllRowsHidden' into develop
gmungoc [Thu, 28 Feb 2019 15:58:47 +0000 (15:58 +0000)]
Merge branch 'bug/JAL-3166npeAllRowsHidden' into develop

5 years agoMerge branch 'feature/JAL-3169cancelOverwrite' into develop
gmungoc [Thu, 28 Feb 2019 15:51:18 +0000 (15:51 +0000)]
Merge branch 'feature/JAL-3169cancelOverwrite' into develop

Conflicts:
src/jalview/io/JalviewFileChooser.java

5 years agoMerge branch 'develop' of http://source.jalview.org/git/jalview into develop
Jim Procter [Thu, 28 Feb 2019 15:31:19 +0000 (15:31 +0000)]
Merge branch 'develop' of source.jalview.org/git/jalview into develop

5 years agoMerge branch 'feature/JAL-3143ensemblJSON' into merge/JAL-3143
gmungoc [Thu, 28 Feb 2019 15:15:21 +0000 (15:15 +0000)]
Merge branch 'feature/JAL-3143ensemblJSON' into merge/JAL-3143

5 years agoMerge remote-tracking branch 'origin/feature/JAL-3141_backupfiles_for211' into merge...
gmungoc [Thu, 28 Feb 2019 14:15:43 +0000 (14:15 +0000)]
Merge remote-tracking branch 'origin/feature/JAL-3141_backupfiles_for211' into merge/JAL3141

5 years agoMerge branch 'feature/JAL-3141_backupfiles_for211' into develop merge/develop_feature/JAL-3141_backupfiles_for211
Jim Procter [Thu, 28 Feb 2019 13:46:48 +0000 (13:46 +0000)]
Merge branch 'feature/JAL-3141_backupfiles_for211' into develop

5 years agoJAL-2527 default Overview 'hide hidden' i.e. WYSIWYG
gmungoc [Wed, 27 Feb 2019 15:36:23 +0000 (15:36 +0000)]
JAL-2527 default Overview 'hide hidden' i.e. WYSIWYG

5 years agoJAL-3201 group colour schemes distinct instances
gmungoc [Tue, 26 Feb 2019 10:41:05 +0000 (10:41 +0000)]
JAL-3201 group colour schemes distinct instances

5 years agoJAL-3200 fast lookup of DSSP3 notation
gmungoc [Mon, 25 Feb 2019 13:46:27 +0000 (13:46 +0000)]
JAL-3200 fast lookup of DSSP3 notation

5 years agoJAL-3198 don't recalculate group conservation for Id Panel selection
gmungoc [Sun, 24 Feb 2019 08:58:51 +0000 (08:58 +0000)]
JAL-3198 don't recalculate group conservation for Id Panel selection

5 years agoJAL-3198 SequenceGroup 'bulk constructor' without duplicates check
gmungoc [Sun, 24 Feb 2019 08:10:17 +0000 (08:10 +0000)]
JAL-3198 SequenceGroup 'bulk constructor' without duplicates check

5 years agoJAL-2915 don't recalculate Overview on scroll to position, ever!
gmungoc [Fri, 22 Feb 2019 11:27:59 +0000 (11:27 +0000)]
JAL-2915 don't recalculate Overview on scroll to position, ever!

5 years agoJAL-2738 don't set AF as feature score
gmungoc [Fri, 22 Feb 2019 10:04:02 +0000 (10:04 +0000)]
JAL-2738 don't set AF as feature score

5 years agoJAL-3141 improved message for asking whether to delete files (file modification time...
Ben Soares [Fri, 22 Feb 2019 09:19:53 +0000 (09:19 +0000)]
JAL-3141 improved message for asking whether to delete files (file modification time and size added to info to help user decide

5 years agoJAL-3141 Sensible refactoring for confirming deleting 'newer' old backup files
Ben Soares [Thu, 21 Feb 2019 17:59:25 +0000 (17:59 +0000)]
JAL-3141 Sensible refactoring for confirming deleting 'newer' old backup files

5 years agoJAL-3141 User warning when deleting old backup files that are newer than the previous...
Ben Soares [Sun, 17 Feb 2019 18:19:42 +0000 (18:19 +0000)]
JAL-3141 User warning when deleting old backup files that are newer than the previous backup file

5 years agoJAL-3141 re-order deletion of old files and check lastModified times with their repla...
Ben Soares [Fri, 15 Feb 2019 19:38:34 +0000 (19:38 +0000)]
JAL-3141 re-order deletion of old files and check lastModified times with their replacements

5 years agoJAL-3141 Added warning/confirmation when suffixReverse is changed without changing...
Ben Soares [Thu, 14 Feb 2019 15:52:03 +0000 (15:52 +0000)]
JAL-3141 Added warning/confirmation when suffixReverse is changed without changing suffixTemplate or suffixDigits (Bad Things might happen to previous backup files)

5 years agoJAL-3141 Moved 'Previously saved scheme' combo box preference out to 'Cancel changes...
Ben Soares [Thu, 14 Feb 2019 14:20:13 +0000 (14:20 +0000)]
JAL-3141 Moved 'Previously saved scheme' combo box preference out to 'Cancel changes' button.  Tidied up the Summary box display.

5 years agoJAL-3140 updated to latest intervalstore.jar
gmungoc [Thu, 7 Feb 2019 11:41:02 +0000 (11:41 +0000)]
JAL-3140 updated to latest intervalstore.jar

5 years agoJAL-3143 update unit test for ID -> id change feature/JAL-3143ensemblJSON
gmungoc [Mon, 4 Feb 2019 12:18:29 +0000 (12:18 +0000)]
JAL-3143 update unit test for ID -> id change

5 years agoJAL-3141 Slight efficiency gain in detecting backupfiles in the File Chooser
Ben Soares [Fri, 1 Feb 2019 09:42:13 +0000 (09:42 +0000)]
JAL-3141 Slight efficiency gain in detecting backupfiles in the File Chooser

5 years agoJAL-3141 Enabled the 'Include backpup files' checkbox for loading alignments from...
Ben Soares [Wed, 30 Jan 2019 10:10:42 +0000 (10:10 +0000)]
JAL-3141 Enabled the 'Include backpup files' checkbox for loading alignments from local file

5 years agoJAL-3141 Found a good fix for updating the FileChooser list of files when 'Include...
Ben Soares [Tue, 29 Jan 2019 14:15:51 +0000 (14:15 +0000)]
JAL-3141 Found a good fix for updating the FileChooser list of files when 'Include backup files' checkbox is checked/unchecked.

5 years agoJAL-3141 Found a (not ideal) fix for updating the FileChooser list of files when...
Ben Soares [Tue, 29 Jan 2019 11:41:52 +0000 (11:41 +0000)]
JAL-3141 Found a (not ideal) fix for updating the FileChooser list of files when 'Include backup files' checkbox is checked/unchecked.

5 years agoJAL-3143 format alleles array for feature description
gmungoc [Tue, 29 Jan 2019 11:17:48 +0000 (11:17 +0000)]
JAL-3143 format alleles array for feature description

5 years agoJAL-3141 improvement on BackupFilenameParts filename matching
Ben Soares [Mon, 28 Jan 2019 10:53:32 +0000 (10:53 +0000)]
JAL-3141 improvement on BackupFilenameParts filename matching

5 years agoJAL-3141 fixed test
Ben Soares [Mon, 28 Jan 2019 10:06:11 +0000 (10:06 +0000)]
JAL-3141 fixed test

5 years agoJAL-3141. This adds quite a lot of code to allow an 'Include backup files' checkbox...
Ben Soares [Fri, 25 Jan 2019 17:32:37 +0000 (17:32 +0000)]
JAL-3141. This adds quite a lot of code to allow an 'Include backup files' checkbox in the 'Load Project' JalviewFileChooser. However I cannot for the life of me get the file list in the FileChooser to refresh /reliably/ on a mac at least anyway (it does about 1 time in 9git status).

5 years agoJAL-3141 Added a '.fa' to filename examples
Ben Soares [Thu, 24 Jan 2019 16:54:21 +0000 (16:54 +0000)]
JAL-3141 Added a '.fa' to filename examples

5 years agoJAL-3141 Change of label (change of '_' character to ' ')
Ben Soares [Thu, 24 Jan 2019 16:47:43 +0000 (16:47 +0000)]
JAL-3141 Change of label (change of '_' character to ' ')

5 years agoJAL-3141 Change of label
Ben Soares [Thu, 24 Jan 2019 16:33:11 +0000 (16:33 +0000)]
JAL-3141 Change of label

5 years agoJAL-3141 Removed border around example filenames in Backups Preferences pane
Ben Soares [Thu, 24 Jan 2019 16:25:26 +0000 (16:25 +0000)]
JAL-3141 Removed border around example filenames in Backups Preferences pane

5 years agoJAL-3141 New layout and wording of Backups Preferences pane after consultation with...
Ben Soares [Thu, 24 Jan 2019 15:56:58 +0000 (15:56 +0000)]
JAL-3141 New layout and wording of Backups Preferences pane after consultation with SD. Seriously rationalised 'backupfiles...SetEnable' to allow for more complex widget enabling/disabling depending on other widget values. Fixed a buglet or two when there's an unusual selection of options (when suffix has no '%n' or is completely empty).

5 years agoJAL-3141 Eclipse re-formatting of file
Ben Soares [Thu, 24 Jan 2019 15:29:54 +0000 (15:29 +0000)]
JAL-3141 Eclipse re-formatting of file

5 years agoJAL-3018 Ensembl version updated to 9.0
gmungoc [Thu, 24 Jan 2019 14:30:31 +0000 (14:30 +0000)]
JAL-3018 Ensembl version updated to 9.0

5 years agoJAL-3141 Reformatted code in eclipse
Ben Soares [Thu, 24 Jan 2019 09:37:05 +0000 (09:37 +0000)]
JAL-3141 Reformatted code in eclipse

5 years agoJAL-3141 Added Presets options in the Backups Preferences pane, with several presets...
Ben Soares [Wed, 23 Jan 2019 20:33:20 +0000 (20:33 +0000)]
JAL-3141 Added Presets options in the Backups Preferences pane, with several presets available and sensible 'Default' option chosen first time.

5 years agoJAL-3063 correct handling of absent choice element in DBRef Mapping
gmungoc [Wed, 23 Jan 2019 09:15:52 +0000 (09:15 +0000)]
JAL-3063 correct handling of absent choice element in DBRef Mapping

5 years agoJAL-3141 Fixed what happens when suffix template has no '%n' index
Ben Soares [Tue, 22 Jan 2019 13:15:08 +0000 (13:15 +0000)]
JAL-3141 Fixed what happens when suffix template has no '%n' index

5 years agoJAL-3141 New message translations
Ben Soares [Tue, 22 Jan 2019 13:14:06 +0000 (13:14 +0000)]
JAL-3141 New message translations

5 years agoJAL-3141 Rejigged the Preferences tab and changed some text
Ben Soares [Mon, 21 Jan 2019 22:56:41 +0000 (22:56 +0000)]
JAL-3141 Rejigged the Preferences tab and changed some text

5 years agoJAL-3141 Fixed tests for new placement of suffix after extension
Ben Soares [Mon, 21 Jan 2019 13:51:48 +0000 (13:51 +0000)]
JAL-3141 Fixed tests for new placement of suffix after extension

5 years agoJAL-3141 removing diagnostic output
Ben Soares [Sun, 20 Jan 2019 15:50:31 +0000 (15:50 +0000)]
JAL-3141 removing diagnostic output

5 years agoJAL-3141 Fixed example filenames in Preferences pane (no extension in BackupFiles...
Ben Soares [Sun, 20 Jan 2019 01:10:59 +0000 (01:10 +0000)]
JAL-3141 Fixed example filenames in Preferences pane (no extension in BackupFiles now), and new default template.

5 years agoJAL-3141 Changed suffix position to after the extension (removed extension detection...
Ben Soares [Sun, 20 Jan 2019 00:08:14 +0000 (00:08 +0000)]
JAL-3141 Changed suffix position to after the extension (removed extension detection altogether), and changed initial defaults.

5 years agoJAL-3141 Re-added some changes in Jalview2XML missed in the merge
Ben Soares [Sun, 20 Jan 2019 00:03:26 +0000 (00:03 +0000)]
JAL-3141 Re-added some changes in Jalview2XML missed in the merge

5 years agoMerge branch 'feature/JAL-3063jaxbNoCastor' into feature/JAL-3141_Create_a_backup_whe...
Jim Procter [Fri, 18 Jan 2019 14:18:57 +0000 (14:18 +0000)]
Merge branch 'feature/JAL-3063jaxbNoCastor' into feature/JAL-3141_Create_a_backup_when_saving_projects_and_other_files
JAL-3063 switched from castor to JAXB - backupFile bits added to jalview.project.Jalview2XML

5 years agoMerge branch 'develop' into feature/JAL-3063jaxbNoCastor
Jim Procter [Fri, 18 Jan 2019 14:06:09 +0000 (14:06 +0000)]
Merge branch 'develop' into feature/JAL-3063jaxbNoCastor

5 years agoJAL-3143 'id' not 'ID' attribute drives generation of variant link
gmungoc [Fri, 18 Jan 2019 09:59:45 +0000 (09:59 +0000)]
JAL-3143 'id' not 'ID' attribute drives generation of variant link

5 years agoJAL-3116 clear out whitespace when materialising Sequence object from Uniprot XML
Jim Procter [Thu, 17 Jan 2019 12:29:06 +0000 (12:29 +0000)]
JAL-3116 clear out whitespace when materialising Sequence object from Uniprot XML

5 years agoJAL-3141 Remove no longer used exampleLabel
Ben Soares [Wed, 16 Jan 2019 14:27:12 +0000 (14:27 +0000)]
JAL-3141 Remove no longer used exampleLabel

5 years agoMerge branch 'feature/JAL-3063jaxbNoCastor' into develop
Jim Procter [Wed, 16 Jan 2019 11:50:22 +0000 (11:50 +0000)]
Merge branch 'feature/JAL-3063jaxbNoCastor' into develop
JAL-3063 todo: add castor-1.1-cycle.jar back to libraries inorder to ensure VAMSAS functionality remains

5 years agoMerge branch 'features/pca_jaxb_datasetrefs_JAL-3171_JAL-3063_JAL-1767' into develop
Jim Procter [Wed, 16 Jan 2019 11:38:15 +0000 (11:38 +0000)]
Merge branch 'features/pca_jaxb_datasetrefs_JAL-3171_JAL-3063_JAL-1767' into develop

5 years agoJAL-1767 test that changing view association for PCA panel can be restored features/pca_jaxb_datasetrefs_JAL-3171_JAL-3063_JAL-1767
Jim Procter [Tue, 15 Jan 2019 13:12:10 +0000 (13:12 +0000)]
JAL-1767 test that changing view association for PCA panel can be restored

5 years agoJAL-1767 refactor associated view logic to public method and synchronise PCAPanel...
Jim Procter [Tue, 15 Jan 2019 13:10:42 +0000 (13:10 +0000)]
JAL-1767 refactor associated view logic to public method and synchronise PCAPanel.av/ap with RotateableCanvac.ap/av

5 years agoJAL-1767 patch buggy PCA view association test
Jim Procter [Tue, 15 Jan 2019 11:19:39 +0000 (11:19 +0000)]
JAL-1767 patch buggy PCA view association test

5 years agoJAL-3141 Forgot this file, sorry!
Ben Soares [Mon, 14 Jan 2019 23:53:16 +0000 (23:53 +0000)]
JAL-3141 Forgot this file, sorry!

5 years agoJAL-3141 Added a 'Save Project as...' File menu item, always asks for filename. Alter...
Ben Soares [Mon, 14 Jan 2019 23:47:38 +0000 (23:47 +0000)]
JAL-3141 Added a 'Save Project as...' File menu item, always asks for filename. Altered 'Save Project' File menu item to automatically save if both 1) projectFile is set (e.g. loaded or previously saved), 2) Backups is enabled

5 years agoJAL-3141 Made more constants
Ben Soares [Mon, 14 Jan 2019 23:40:48 +0000 (23:40 +0000)]
JAL-3141 Made more constants

5 years agoJAL-3186 remove Variable Colour from popup menu
gmungoc [Mon, 14 Jan 2019 16:13:10 +0000 (16:13 +0000)]
JAL-3186 remove Variable Colour from popup menu

5 years agoJAL-3186 remove duplicate message keys
gmungoc [Mon, 14 Jan 2019 16:00:59 +0000 (16:00 +0000)]
JAL-3186 remove duplicate message keys

5 years agoJAL-2069 wider dialog so all fields show!
gmungoc [Fri, 16 Nov 2018 08:04:54 +0000 (08:04 +0000)]
JAL-2069 wider dialog so all fields show!

Conflicts:
src/jalview/gui/FeatureTypeSettings.java

5 years agoJAL-2069 clear any error colour when setting threshold from slider
gmungoc [Mon, 14 Jan 2019 14:25:11 +0000 (14:25 +0000)]
JAL-2069 clear any error colour when setting threshold from slider

5 years agoJAL-3125 tidy up
gmungoc [Wed, 26 Sep 2018 14:08:11 +0000 (15:08 +0100)]
JAL-3125 tidy up

5 years agoJAL-3125 avoid slider 'rounding' threshold field value
gmungoc [Wed, 26 Sep 2018 11:05:01 +0000 (12:05 +0100)]
JAL-3125 avoid slider 'rounding' threshold field value

5 years agoJAL-3141 removed redundant method to tests
Ben Soares [Wed, 9 Jan 2019 18:29:05 +0000 (18:29 +0000)]
JAL-3141 removed redundant method to tests

5 years agoJAL-1767 failing test to check if the PCA view association is correctly saved and...
Jim Procter [Wed, 9 Jan 2019 17:29:21 +0000 (17:29 +0000)]
JAL-1767 failing test to check if the PCA view association is correctly saved and restored

5 years agoMerge branch 'feature/JAL-3063JAXB' into features/pca_jaxb_datasetrefs_JAL-3171_JAL...
Jim Procter [Wed, 9 Jan 2019 16:24:44 +0000 (16:24 +0000)]
Merge branch 'feature/JAL-3063JAXB' into features/pca_jaxb_datasetrefs_JAL-3171_JAL-3063_JAL-1767

5 years agoMerge branch 'feature/JAL-3063JAXB' into feature/JAL-3063jaxbNoCastor
Jim Procter [Wed, 9 Jan 2019 16:24:20 +0000 (16:24 +0000)]
Merge branch 'feature/JAL-3063JAXB' into feature/JAL-3063jaxbNoCastor

5 years agoJAL-3063 remove stale JAXB binding POJO
Jim Procter [Wed, 9 Jan 2019 16:23:37 +0000 (16:23 +0000)]
JAL-3063 remove stale JAXB binding POJO

5 years agoMerge branch 'feature/JAL-3063JAXB' into features/pca_jaxb_datasetrefs_JAL-3171_JAL...
Jim Procter [Wed, 9 Jan 2019 16:22:03 +0000 (16:22 +0000)]
Merge branch 'feature/JAL-3063JAXB' into features/pca_jaxb_datasetrefs_JAL-3171_JAL-3063_JAL-1767