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2020-09-10	gmungoc	JAL-2422 comments updated re ALTLOC handling	commit \| commitdiff \| tree
2020-05-24	Jim Procter	JAL-3407 redact Java 8 incompatible '<>' with anonymous...	commit \| commitdiff \| tree
2020-05-21	gmungoc	JAL-3551 copy Jalview features to Pymol 'p' (with pull...	commit \| commitdiff \| tree
2020-05-21	gmungoc	JAL-2422 highlight ChimeraX selection (ChimeraX-1.0...	commit \| commitdiff \| tree
2020-05-20	gmungoc	JAL-3626 use Viewer.scriptWait() to send Jmol commands...	commit \| commitdiff \| tree
2020-05-19	gmungoc	JAL-3621 corrected sequence feature sort and test	commit \| commitdiff \| tree
2020-05-19	gmungoc	Merge branch 'develop' into feature/JAL-3551Pymol	commit \| commitdiff \| tree
2020-05-18	gmungoc	JAL-3463 avoid Thread.sleep() as not supported in SwingJS	commit \| commitdiff \| tree
2020-05-18	gmungoc	JAL-3621 update to intervalstore v1.1	commit \| commitdiff \| tree
2020-05-18	gmungoc	JAL-3529 test updated for revised signature of getDBRefs()	commit \| commitdiff \| tree
2020-05-18	gmungoc	Merge branch 'Jalview-JS/develop' into develop	commit \| commitdiff \| tree
2020-05-18	gmungoc	JAL-3613 remove debug code committed in error	commit \| commitdiff \| tree
2020-05-15	gmungoc	JAL-2422 JAL-3551 unit tests updated for code changes	commit \| commitdiff \| tree
2020-05-15	gmungoc	JAL-3619 default silently to Jmol if viewerType absent...	commit \| commitdiff \| tree
2020-05-15	gmungoc	JAL-3551 pull up Close Viewer dialog to base class	commit \| commitdiff \| tree
2020-05-15	gmungoc	Merge branch 'feature/JAL-3551Pymol' into feature/JAL...	commit \| commitdiff \| tree
2020-05-15	gmungoc	JAL-3551 raise label on ('highlight') structure residue...	commit \| commitdiff \| tree
2020-05-12	gmungoc	JAL-3518 tidy method, remove obsolete comment	commit \| commitdiff \| tree
2020-05-12	gmungoc	JAL-3518 failsafe check for null Jmol filename while...	commit \| commitdiff \| tree
2020-05-11	gmungoc	JAL-3551 concatenate colour by sequence commands for...	commit \| commitdiff \| tree
2020-05-11	gmungoc	JAL-2422 JAL-3551 viewer text/variables generalised...	commit \| commitdiff \| tree
2020-05-11	gmungoc	JAL-2422 ChimeraX paths (versions up to 1.0) added...	commit \| commitdiff \| tree
2020-05-11	gmungoc	JAL-1333 additional Chimera versions for Windows installatio...	commit \| commitdiff \| tree
2020-05-11	gmungoc	JAL-2422 restore saved ChimeraX session from project	commit \| commitdiff \| tree
2020-05-01	gmungoc	JAL-3613 check sequence overlap when matching search...	commit \| commitdiff \| tree
2020-04-30	gmungoc	JAL-3551 save structure viewer session refactorings...	commit \| commitdiff \| tree
2020-04-30	gmungoc	JAL-3551 tidied error handling for HTTP request	commit \| commitdiff \| tree
2020-04-25	gmungoc	Merge branch 'develop' into feature/JAL-3551Pymol	commit \| commitdiff \| tree
2020-04-21	gmungoc	JAL-3210 try adding setup method to unit test failing...	commit \| commitdiff \| tree
2020-04-21	gmungoc	JAL-1889 corrected wait for consensus to be calculated	commit \| commitdiff \| tree
2020-04-21	gmungoc	JAL-3603 load annotation file from RELATIVE_URL in...	commit \| commitdiff \| tree
2020-04-17	gmungoc	JAL-3567 unit tests for linked feature tooltips	commit \| commitdiff \| tree
2020-04-16	gmungoc	JAL-3567 adjust layout of linked feature report, unit...	commit \| commitdiff \| tree
2020-04-16	gmungoc	JAL-3567 added 'imputed by Jalview' to protein consequence...	commit \| commitdiff \| tree
2020-04-16	gmungoc	JAL-3567 report mapped location for virtual features...	commit \| commitdiff \| tree
2020-04-14	gmungoc	JAL-3583 remove debug logging, Javadoc added	commit \| commitdiff \| tree
2020-04-13	gmungoc	JAL-3574 test coverage corners	commit \| commitdiff \| tree
2020-04-13	gmungoc	JAL-3574 Matcher with integer/long value pattern (e...	commit \| commitdiff \| tree
2020-04-12	gmungoc	JAL-3596 change redacted	commit \| commitdiff \| tree
2020-04-12	gmungoc	JAL-3596 don't draw text over features if Show Text...	commit \| commitdiff \| tree
2020-04-12	gmungoc	JAL-3583 consistent last[Formatted]Tooltip, show once...	commit \| commitdiff \| tree
2020-04-07	gmungoc	JAL-3210 fudge for JalviewJS to avoid IntervalStore...	commit \| commitdiff \| tree
2020-04-06	gmungoc	JAL-3581 no hidden sequence marker if hidden markers...	commit \| commitdiff \| tree
2020-04-06	gmungoc	JAL-3581 no hidden sequence marker if hidden markers...	commit \| commitdiff \| tree
2020-04-06	gmungoc	Merge branch 'develop' into Jalview-JS/develop	commit \| commitdiff \| tree
2020-04-06	gmungoc	JAL-3579 no Feature Editor if features not shown	commit \| commitdiff \| tree
2020-03-31	gmungoc	Merge branch 'develop' into Jalview-JS/develop	commit \| commitdiff \| tree
2020-03-31	gmungoc	JAL-1889 better (?) wait for Conservation thread	commit \| commitdiff \| tree
2020-03-31	gmungoc	JAL-3210 JAL-3130 merge changes to JSON processing	commit \| commitdiff \| tree
2020-03-31	gmungoc	Merge branch 'develop' into Jalview-JS/develop	commit \| commitdiff \| tree
2020-03-30	gmungoc	Merge branch 'Jalview-JS/develop' of https://source...	commit \| commitdiff \| tree
2020-03-30	gmungoc	JAL-3210 debug logging commented out	commit \| commitdiff \| tree
2020-03-30	gmungoc	JAL-3210 test updated for changed signature of SequenceI...	commit \| commitdiff \| tree
2020-03-30	gmungoc	Merge branch 'develop' into Jalview-JS/develop	commit \| commitdiff \| tree
2020-03-19	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2020-03-19	gmungoc	JAL-3305 don't propagate an empty SelectionGroup to...	commit \| commitdiff \| tree
2020-03-16	gmungoc	JAL-3551 tidying, improved commands, fix Jmol model...	commit \| commitdiff \| tree
2020-03-16	gmungoc	JAL-3551 the correct PyMOL colour by chain command	commit \| commitdiff \| tree
2020-03-13	gmungoc	JAL-3551 working proof of concept of Jalview driving...	commit \| commitdiff \| tree
2020-03-09	gmungoc	Merge branch 'develop' into feature/JAL-2422ChimeraX	commit \| commitdiff \| tree
2020-03-09	gmungoc	JAL-3528 unit tests added for failed lookup, Javadoc	commit \| commitdiff \| tree
2020-03-09	gmungoc	JAL-3407 3549 in release notes	commit \| commitdiff \| tree
2020-03-09	gmungoc	JAL-3549 JAL-3305 no Sort By Score / Density if no...	commit \| commitdiff \| tree
2020-03-09	gmungoc	JAL-3412 update layout whenever desired id width changes	commit \| commitdiff \| tree
2020-03-06	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2020-03-06	gmungoc	JAL-3187 unit test for findComplementFeaturesAtResidue	commit \| commitdiff \| tree
2020-03-06	gmungoc	JAL-3407 added 3468 to release notes	commit \| commitdiff \| tree
2020-03-06	gmungoc	Merge branch 'feature/JAL-3468featureDescriptionEllipsis...	commit \| commitdiff \| tree
2020-03-06	gmungoc	JAL-3468 i18n and additional unit tests	commit \| commitdiff \| tree
2020-03-06	gmungoc	JAL-3407 release note tweaks, added 3533 3538 3534...	commit \| commitdiff \| tree
2020-03-03	gmungoc	JAL-3158 superseded superposeStructures methods removed	commit \| commitdiff \| tree
2020-03-03	gmungoc	JAL-3518 more pull up / test coverage of structure...	commit \| commitdiff \| tree
2020-02-29	gmungoc	JAL-3518 correct override for ChimeraX colour by residues	commit \| commitdiff \| tree
2020-02-28	gmungoc	JAL-3518 basic refactoring / pull up of superposeStructures...	commit \| commitdiff \| tree
2020-02-21	gmungoc	JAL-3518 more extraction of ChimeraX commands as overrides	commit \| commitdiff \| tree
2020-02-21	gmungoc	JAL-2422 tidy of methods and parameters	commit \| commitdiff \| tree
2020-02-21	gmungoc	JAL-2422 general pull-up/removal of common or unused...	commit \| commitdiff \| tree
2020-02-20	gmungoc	JAL-3187 repaint complement after loading on features	commit \| commitdiff \| tree
2020-02-20	gmungoc	JAL-2422 pull-up refactoring of structure commands...	commit \| commitdiff \| tree
2020-02-18	Mungo Carstairs	JAL-3536 JAL-3187 don't create duplicate CDS-to-protein...	commit \| commitdiff \| tree
2020-02-04	gmungoc	JAL-2422 remove temporary debug code	commit \| commitdiff \| tree
2020-02-04	gmungoc	JAL-2422 fixed stopProgressBar (broken in pull up refactoring)	commit \| commitdiff \| tree
2020-02-04	gmungoc	JAL-2422 pull up refactoring in preparation for ChimeraX...	commit \| commitdiff \| tree
2020-01-31	gmungoc	JAL-2422 temporary hacks removed; use hex colours for...	commit \| commitdiff \| tree
2020-01-31	gmungoc	JAL-2422 more responsive Chimera/X path prompts in...	commit \| commitdiff \| tree
2020-01-30	gmungoc	JAL-2422 save/restore ChimeraX session	commit \| commitdiff \| tree
2020-01-28	gmungoc	JAL-3341 debug for failing unit test	commit \| commitdiff \| tree
2020-01-28	gmungoc	Merge branch 'feature/JAL-3121gffAttributeMap' into...	commit \| commitdiff \| tree
2020-01-28	gmungoc	JAL-3187 one more obsolete method removed	commit \| commitdiff \| tree
2020-01-28	gmungoc	JAL-2422 ChimeraX added to Preferences	commit \| commitdiff \| tree
2020-01-24	gmungoc	JAL=3121 more data format validation/tests, help text...	commit \| commitdiff \| tree
2020-01-23	gmungoc	JAL-3121 update help page for GFF column 9 nested attributes	commit \| commitdiff \| tree
2020-01-23	gmungoc	JAL-3121 'attributes map' in GFF3 without special ...	commit \| commitdiff \| tree
2020-01-14	gmungoc	JAL-2422 proof of concept adaptations for ChimeraX...	commit \| commitdiff \| tree
2019-12-20	Ben Soares	JAL-3473 Checked value of def and min. Set def to min...	commit \| commitdiff \| tree
2019-12-20	Ben Soares	JAL-3473 Checked value of def and min. Set def to min...	commit \| commitdiff \| tree
2019-12-19	gmungoc	Merge branch 'Jalview-JS/develop' of https://source...	commit \| commitdiff \| tree
2019-12-19	gmungoc	JAL-3487 updates to transpiler (redone for JS/Develop...	commit \| commitdiff \| tree
2019-12-13	gmungoc	JAL-2422 'label' command to highlight ChimeraX residue...	commit \| commitdiff \| tree
2019-12-13	gmungoc	JAL-2422 write Jalview features to ChimeraX via command...	commit \| commitdiff \| tree
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