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2019-10-07	Jim Procter	JAL-3066 debug info: check response when adding features...	commit \| commitdiff \| tree
2019-10-07	Jim Procter	JAL-3066 JAL-3070 AACon: pass the name of the service...	commit \| commitdiff \| tree
2019-10-07	Jim Procter	JAL-3066 hack to instantiate the correct client according...	commit \| commitdiff \| tree
2019-10-07	Jim Procter	JAL-3070 jaba/slivka independent tests for disorder...	commit \| commitdiff \| tree
2019-10-07	Jim Procter	JAL-3070 JAL-3066 provide standard concrete instances...	commit \| commitdiff \| tree
2019-10-07	Jim Procter	JAL-3070 JAL-3066 fix initialisation of slivka ServiceWithPa...	commit \| commitdiff \| tree
2019-10-07	Jim Procter	JAL-3070 use identity equivalence for workers rather...	commit \| commitdiff \| tree
2019-10-07	Jim Procter	JAL-3070 formatting	commit \| commitdiff \| tree
2019-10-03	Jim Procter	JAL-3070 reinstate the internal test service URL for...	commit \| commitdiff \| tree
2019-10-03	Jim Procter	JAL-3070 test jabaws and slivka AACon service functionality	commit \| commitdiff \| tree
2019-10-03	Jim Procter	JAL-3070 slivka service discovery as a background thread...	commit \| commitdiff \| tree
2019-10-03	Jim Procter	JAL-3070 basic AACon service functionality test	commit \| commitdiff \| tree
2019-10-03	Jim Procter	JAL-3070 alignment analysis service worker UI and settings...	commit \| commitdiff \| tree
2019-10-03	Jim Procter	JAL-3070 call checkDone() ASAP to avoid race condition...	commit \| commitdiff \| tree
2019-10-02	Jim Procter	JAL-3070 decouple WsMenuEntryProviderI code from JABAWS	commit \| commitdiff \| tree
2019-10-02	Jim Procter	JAL-3070 reorganise prior to refactor	commit \| commitdiff \| tree
2019-10-02	Jim Procter	JAL-3070 make AlignCalcUI service code work only with...	commit \| commitdiff \| tree
2019-10-02	Jim Procter	JAL-3070 discoverers return ServiceWithParameter, now...	commit \| commitdiff \| tree
2019-10-02	Jim Procter	JAL-3070 decontaminate the ‘preferred service’ methods...	commit \| commitdiff \| tree
2019-10-02	Jim Procter	JAL-3070 JAL-3062 tidy up slivka ws menu builder and...	commit \| commitdiff \| tree
2019-10-02	Jim Procter	JAL-3070 detect failed/broken annotation web service...	commit \| commitdiff \| tree
2019-10-02	Jim Procter	JAL-3070 pull up generic methods for an automatic alignment...	commit \| commitdiff \| tree
2019-10-02	Jim Procter	JAL-3070 TODO	commit \| commitdiff \| tree
2019-09-26	Jim Procter	JAL-3070 oops - refactor Slivka’s service stub too :)	commit \| commitdiff \| tree
2019-09-26	Jim Procter	JAL-3070 JAL-3066 JAL-3067 refactor annotation web...	commit \| commitdiff \| tree
2019-09-26	Jim Procter	JAL-3070 JAL-3066 JAL-2808 allow feature filter definition...	commit \| commitdiff \| tree
2019-09-26	Jim Procter	JAL-3070 allow SequenceI.findPositions(0,column+1)...	commit \| commitdiff \| tree
2019-09-26	Jim Procter	JAL-3070 cope when dataset sequence is passed	commit \| commitdiff \| tree
2019-09-26	Jim Procter	JAL-3070 JAL-3066 formatting	commit \| commitdiff \| tree
2019-09-26	Jim Procter	JAL-3070 JAL-3066 AlignmentI.findOrAddAnnotation(AlignmentAn...	commit \| commitdiff \| tree
2019-09-24	Jim Procter	JAL-3070 tidying	commit \| commitdiff \| tree
2019-09-23	Jim Procter	JAL-3066 JAL-3070 pull up non-jabaws specific service...	commit \| commitdiff \| tree
2019-09-23	Jim Procter	Merge branch 'tasks/JAL-3070_wsinterfaces' into alpha...	commit \| commitdiff \| tree
2019-09-23	Jim Procter	JAL-3070 configure annotation service manager from...	commit \| commitdiff \| tree
2019-09-23	Jim Procter	JAL-3070 rename AbstractJabaCalcWorker to SeqAnnotationServi...	commit \| commitdiff \| tree
2019-09-23	Jim Procter	JAL-3070 ensure RNAAliFold annotation rows display...	commit \| commitdiff \| tree
2019-09-23	Jim Procter	JAL-3070 formatting	commit \| commitdiff \| tree
2019-09-23	Jim Procter	JAL-3070 detect presence of existing JABA RNAAliFold...	commit \| commitdiff \| tree
2019-09-23	Jim Procter	JAL-3070 match AbstractJabaCalcWorker’s annotation...	commit \| commitdiff \| tree
2019-09-23	Jim Procter	JAL-3070 javadoc for (mostly) jabaws specific methods	commit \| commitdiff \| tree
2019-09-20	Jim Procter	JAL-3070 rough-and-ready refactor of JABA SequenceAnnotation...	commit \| commitdiff \| tree
2019-09-20	Jim Procter	JAL-3070 JAL-1379 deferred work on annotation based...	commit \| commitdiff \| tree
2019-09-20	Jim Procter	JAL-3070 JAL-2507 fix up test output and honour the...	commit \| commitdiff \| tree
2019-09-17	Jim Procter	JAL-3432 hide the slider when validator has no min...	commit \| commitdiff \| tree
2019-09-06	Jim Procter	JAL-3066 fix compile error (@matesuz - this will conflict...	commit \| commitdiff \| tree
2019-09-06	Jim Procter	JAL_1426 JAL-3066 update Apache James mime parser and...	commit \| commitdiff \| tree
2019-08-13	Jim Procter	JAL-3362 keep Java 1.8 build happy by specifying generic...	commit \| commitdiff \| tree
2019-08-13	Jim Procter	Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into...	commit \| commitdiff \| tree
2019-07-15	Jim Procter	Merge branch 'merge/JAL-3285_mchmmer_with_211_develop...	commit \| commitdiff \| tree
2019-07-11	Jim Procter	Merge branch 'merge/JAL-3285_mchmmer_with_211_develop...	commit \| commitdiff \| tree
2019-07-10	Jim Procter	JAL-3070 standard way of storing/recovering documentation...	commit \| commitdiff \| tree
2019-07-10	Jim Procter	JAL-3070 remove final reference to Jws2Instance	commit \| commitdiff \| tree
2019-07-10	Jim Procter	Merge branch 'tasks/JAL-3070_wsinterfaces' into alpha...	commit \| commitdiff \| tree
2019-07-10	Jim Procter	JAL-3289 bamboo properties for ‘BUILD’ getdown channel...	commit \| commitdiff \| tree
2019-07-10	Jim Procter	JAL-3289 bamboo properties for ‘BUILD’ getdown channel	commit \| commitdiff \| tree
2019-07-10	Jim Procter	JAL-3289 bamboo properties for ‘BUILD’ getdown channel...	commit \| commitdiff \| tree
2019-07-10	Jim Procter	JAL-3289 bamboo properties for ‘BUILD’ getdown channel	commit \| commitdiff \| tree
2019-07-10	Jim Procter	Merge branch 'merge/JAL-3285_mchmmer_with_211_develop...	commit \| commitdiff \| tree
2019-07-04	Jim Procter	JAL-3111 correct JVL appbase for 2.10.5 via getdown	commit \| commitdiff \| tree
2019-07-04	Jim Procter	Merge branch 'task/JAL-3337-rm-lib-update-sourceDist...	commit \| commitdiff \| tree
2019-07-04	Jim Procter	Merge branch 'develop' of http://source.jalview.org...	commit \| commitdiff \| tree
2019-07-04	Jim Procter	JAL-3337 round-and-round the process source files again	commit \| commitdiff \| tree
2019-07-04	Jim Procter	JAL-3337 more includes and excludes	commit \| commitdiff \| tree
2019-07-04	Jim Procter	JAL-3337 remove the old lib directory !	commit \| commitdiff \| tree
2019-07-04	Jim Procter	JAL-3337 rejig the source distribution generation to...	commit \| commitdiff \| tree
2019-07-04	Jim Procter	JAL-3111 replace year in header for help pages and...	commit \| commitdiff \| tree
2019-07-04	Jim Procter	Merge branch 'task/JAL-3348_document_cli_memory_settings_whe...	commit \| commitdiff \| tree
2019-07-04	Jim Procter	JAL-3111 JAL-3348 JVL file documentation	commit \| commitdiff \| tree
2019-07-04	Jim Procter	JAL-3348 revised bsoares memory settings documentation...	commit \| commitdiff \| tree
2019-07-03	Jim Procter	JAL-3111 tidy up lists/indentation for release notes	commit \| commitdiff \| tree
2019-07-03	Jim Procter	JAL-3111 Java 11 only and 'onwards'	commit \| commitdiff \| tree
2019-07-03	Jim Procter	JAL-3111 more whatsNew tweaks	commit \| commitdiff \| tree
2019-07-03	Jim Procter	Merge branch 'task/JAL-3337_gradle_tasks_sourceDist_and_help...	commit \| commitdiff \| tree
2019-07-03	Jim Procter	JAL-3111 more whats new	commit \| commitdiff \| tree
2019-07-03	Jim Procter	Merge branch 'documentation/JAL-2843_featureFiltersFormat...	commit \| commitdiff \| tree
2019-07-02	Jim Procter	JAL-3111 updated what’s new… still more to come !	commit \| commitdiff \| tree
2019-07-02	Jim Procter	JAL-3111 updated privacy statement to remove mention...	commit \| commitdiff \| tree
2019-07-02	Jim Procter	JAL-3111 JAL-3150 revised Jalview archive documentation...	commit \| commitdiff \| tree
2019-07-02	Jim Procter	JAL-3111 JAL-3348 removed pre 2.11 instructions on...	commit \| commitdiff \| tree
2019-07-02	Jim Procter	JAL-3111 JAL-3280 hide the version check preference...	commit \| commitdiff \| tree
2019-07-02	Jim Procter	JAL-3111 tidied up preferences dialog documentation	commit \| commitdiff \| tree
2019-07-02	Jim Procter	JAL-3111 fix broken helpTOC link	commit \| commitdiff \| tree
2019-07-02	Jim Procter	Merge branch 'tasks/JAL-3311_removeVamsasMenu' into...	commit \| commitdiff \| tree
2019-07-02	Jim Procter	Merge branch 'develop' into tasks/JAL-3311_removeVamsasMenu	commit \| commitdiff \| tree
2019-07-02	Jim Procter	JAL-3111 release date now 4th July 2019 - codename...	commit \| commitdiff \| tree
2019-07-02	Jim Procter	Merge branch 'documentation/JAL-3111_release_211' into...	commit \| commitdiff \| tree
2019-07-02	Jim Procter	JAL-3111 formatting	commit \| commitdiff \| tree
2019-07-02	Jim Procter	JAL-3111 new known defect from JAL-797	commit \| commitdiff \| tree
2019-07-02	Jim Procter	JAL-3111 release notes for JAL-2789 JAL-2744 JAL-1889...	commit \| commitdiff \| tree
2019-07-02	Jim Procter	JAL-3111 whats new and JAL-2738 JAL-2743 expanded help...	commit \| commitdiff \| tree
2019-07-02	Jim Procter	JAL-3337 gradle.properties for publish help as html...	commit \| commitdiff \| tree
2019-07-02	Jim Procter	JAL-3337 publish help as html pages with GA tracker...	commit \| commitdiff \| tree
2019-06-28	Jim Procter	JAL-3111 release notes for JAL-3330 JAL-3021 (tweak...	commit \| commitdiff \| tree
2019-06-28	Jim Procter	Merge branch 'bug/JAL-3333_Blurry_fonts_in_WebServiceInfo_wi...	commit \| commitdiff \| tree
2019-06-28	Jim Procter	JAL-3111 release notes for JAL-2820 JAL-2207	commit \| commitdiff \| tree
2019-06-28	Jim Procter	JAL-3111 backed out report of fix to JAL-3178 in release...	commit \| commitdiff \| tree
2019-06-28	Jim Procter	JAL-3111 JAL-3340 JAL-3184 JAL-3338 new known defects	commit \| commitdiff \| tree
2019-06-28	Jim Procter	Merge branch 'documentation/JAL-3111_release_211' into...	commit \| commitdiff \| tree
2019-06-28	Jim Procter	JAL-3111 final release date for 2.11.0	commit \| commitdiff \| tree
2019-06-28	Jim Procter	JAL-3330 apply Ensembl feature settings when showing...	commit \| commitdiff \| tree
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