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2006-10-24	amwaterhouse	Make everything final	commit \| commitdiff \| tree
2006-10-24	amwaterhouse	New accelerators	commit \| commitdiff \| tree
2006-10-24	amwaterhouse	Commented out for compilation	commit \| commitdiff \| tree
2006-10-24	amwaterhouse	setOrder is public	commit \| commitdiff \| tree
2006-10-24	amwaterhouse	Commands which can be done, or undone	commit \| commitdiff \| tree
2006-10-24	amwaterhouse	Its historycvs remove jalview/datamodel/HistoryItem...	commit \| commitdiff \| tree
2006-10-18	amwaterhouse	Wait for response from server before next sequence	commit \| commitdiff \| tree
2006-10-18	amwaterhouse	showqual, showcons never used	commit \| commitdiff \| tree
2006-10-18	amwaterhouse	remove html and body from tooltip	commit \| commitdiff \| tree
2006-10-18	amwaterhouse	new feature args	commit \| commitdiff \| tree
2006-10-18	amwaterhouse	Can set description for new features	commit \| commitdiff \| tree
2006-10-18	amwaterhouse	Faded anntotations when recalculating	commit \| commitdiff \| tree
2006-10-18	amwaterhouse	set conserve and quality null if outofmemory	commit \| commitdiff \| tree
2006-10-18	amwaterhouse	No longer a FeatureListener	commit \| commitdiff \| tree
2006-10-18	amwaterhouse	parseDescriptionHTML	commit \| commitdiff \| tree
2006-10-18	amwaterhouse	draw text after linkimage	commit \| commitdiff \| tree
2006-10-18	amwaterhouse	Remove system.out	commit \| commitdiff \| tree
2006-10-18	amwaterhouse	Gerneral XML parse error	commit \| commitdiff \| tree
2006-10-12	amwaterhouse	showQuality may be updated during archive file load	commit \| commitdiff \| tree
2006-10-12	amwaterhouse	Convenient function findEndRes	commit \| commitdiff \| tree
2006-10-12	amwaterhouse	Add features from Popupmenu	commit \| commitdiff \| tree
2006-10-12	amwaterhouse	Overview may request index beyond alignment height	commit \| commitdiff \| tree
2006-10-12	amwaterhouse	Use i, not index if not representedSeqs	commit \| commitdiff \| tree
2006-10-12	amwaterhouse	If conservation is null, disable Blosum62 and conservation...	commit \| commitdiff \| tree
2006-10-12	amwaterhouse	Annotasiont[j] might be null	commit \| commitdiff \| tree
2006-10-12	amwaterhouse	Local adjustForhiddenSeqs routine	commit \| commitdiff \| tree
2006-10-12	amwaterhouse	RepresentGroup count items	commit \| commitdiff \| tree
2006-10-12	amwaterhouse	Null element checked	commit \| commitdiff \| tree
2006-10-12	amwaterhouse	HiddenSequences now array, not hashtable	commit \| commitdiff \| tree
2006-10-12	amwaterhouse	Comment out debug to compile applet	commit \| commitdiff \| tree
2006-10-10	amwaterhouse	No need to find index when deleting	commit \| commitdiff \| tree
2006-10-10	amwaterhouse	Calculate alWidth earlier	commit \| commitdiff \| tree
2006-10-10	amwaterhouse	Remove growing hashtable	commit \| commitdiff \| tree
2006-10-10	amwaterhouse	Check on null consensus	commit \| commitdiff \| tree
2006-10-10	amwaterhouse	Must repaint whole alignPanel	commit \| commitdiff \| tree
2006-10-10	amwaterhouse	MaxResidue must be at least 2	commit \| commitdiff \| tree
2006-10-10	amwaterhouse	Remove unneccessary separator	commit \| commitdiff \| tree
2006-10-10	amwaterhouse	Only getGroups once if groupEditingcvs update	commit \| commitdiff \| tree
2006-10-10	amwaterhouse	1.1 compatible	commit \| commitdiff \| tree
2006-10-10	amwaterhouse	Use AAFrequency final keys	commit \| commitdiff \| tree
2006-10-10	amwaterhouse	SetTooltip empty	commit \| commitdiff \| tree
2006-10-10	amwaterhouse	Optimized	commit \| commitdiff \| tree
2006-10-10	amwaterhouse	aaIndex replaces aaHash	commit \| commitdiff \| tree
2006-10-10	amwaterhouse	static final strings for consensus keys	commit \| commitdiff \| tree
2006-10-10	amwaterhouse	Consensus and conservation updated in threads	commit \| commitdiff \| tree
2006-10-06	amwaterhouse	AAFrequency optimized	commit \| commitdiff \| tree
2006-10-06	amwaterhouse	Set consensus as hashtble[]	commit \| commitdiff \| tree
2006-10-05	amwaterhouse	Multiple Views	commit \| commitdiff \| tree
2006-10-05	amwaterhouse	BatchSize now 10	commit \| commitdiff \| tree
2006-10-05	amwaterhouse	OutOfMemoryError test	commit \| commitdiff \| tree
2006-10-05	amwaterhouse	TabbedPanes for views	commit \| commitdiff \| tree
2006-10-05	amwaterhouse	lower case available	commit \| commitdiff \| tree
2006-10-05	amwaterhouse	AlignFrame must take width and height	commit \| commitdiff \| tree
2006-10-05	amwaterhouse	Sequenceset may be empty, multiple views	commit \| commitdiff \| tree
2006-10-05	amwaterhouse	DEFAULT_WIDTH	commit \| commitdiff \| tree
2006-10-05	amwaterhouse	Viewname, sequencesetid, gatheredViews	commit \| commitdiff \| tree
2006-10-05	amwaterhouse	Sequences are optionalcvs diff vamsas.xsd	commit \| commitdiff \| tree
2006-10-03	amwaterhouse	Check annotation is editable	commit \| commitdiff \| tree
2006-10-03	amwaterhouse	Send DAS requests in batches of 20	commit \| commitdiff \| tree
2006-10-03	amwaterhouse	DB seqs may be lower or upper case	commit \| commitdiff \| tree
2006-10-03	amwaterhouse	BoldFont upperCase	commit \| commitdiff \| tree
2006-10-03	amwaterhouse	Remove empty() from feature ToolTip	commit \| commitdiff \| tree
2006-10-03	amwaterhouse	Check selection scroll beyond aligmnment height	commit \| commitdiff \| tree
2006-10-03	amwaterhouse	Check on vscrollMax values	commit \| commitdiff \| tree
2006-10-03	amwaterhouse	upperCaseBold	commit \| commitdiff \| tree
2006-10-03	amwaterhouse	TurnColour bug on popupmenu applet	commit \| commitdiff \| tree
2006-09-18	amwaterhouse	Draw hidden column marker correctly	commit \| commitdiff \| tree
2006-09-18	amwaterhouse	click node to select sequences	commit \| commitdiff \| tree
2006-09-15	amwaterhouse	Simplified schema	commit \| commitdiff \| tree
2006-09-15	amwaterhouse	Simplified layout	commit \| commitdiff \| tree
2006-09-12	amwaterhouse	hideSequence hide all before recalc consensus	commit \| commitdiff \| tree
2006-09-12	amwaterhouse	Copy consensus	commit \| commitdiff \| tree
2006-09-12	amwaterhouse	2.1.1 bug fix	commit \| commitdiff \| tree
2006-09-12	amwaterhouse	2.1.1 bug fix	commit \| commitdiff \| tree
2006-09-12	amwaterhouse	Add copy consensus sequence	commit \| commitdiff \| tree
2006-09-12	amwaterhouse	Allow alt for group editing	commit \| commitdiff \| tree
2006-09-12	amwaterhouse	For now ignore middle mouse font resize on Mac applet	commit \| commitdiff \| tree
2006-09-12	amwaterhouse	Allow alt button for Mac applet group editing	commit \| commitdiff \| tree
2006-09-11	amwaterhouse	Comment out lower case colouring for bug fix release	commit \| commitdiff \| tree
2006-09-11	amwaterhouse	Remove system.outs	commit \| commitdiff \| tree
2006-09-11	amwaterhouse	get idWidth should use italic font when getting size	commit \| commitdiff \| tree
2006-09-11	amwaterhouse	Error message if file not found moved for headless...	commit \| commitdiff \| tree
2006-09-11	amwaterhouse	visWidth allows borders to be drawn around offscreen...	commit \| commitdiff \| tree
2006-09-11	amwaterhouse	Remove system.out	commit \| commitdiff \| tree
2006-09-11	amwaterhouse	getVisibleIdWidth() for making images	commit \| commitdiff \| tree
2006-09-01	amwaterhouse	Dont look for middle mouse on the Mac	commit \| commitdiff \| tree
2006-09-01	amwaterhouse	MAC moved to viewport	commit \| commitdiff \| tree
2006-09-01	amwaterhouse	feature settings	commit \| commitdiff \| tree
2006-09-01	amwaterhouse	Feature Settings	commit \| commitdiff \| tree
2006-08-30	amwaterhouse	GraphHeight might be zero	commit \| commitdiff \| tree
2006-08-30	amwaterhouse	jnet file is 1 to 1 mapping	commit \| commitdiff \| tree
2006-08-30	amwaterhouse	Remove unnecessary separotor	commit \| commitdiff \| tree
2006-08-30	amwaterhouse	Gap added to aa3Hash	commit \| commitdiff \| tree
2006-08-30	amwaterhouse	User colours are case sensitive	commit \| commitdiff \| tree
2006-08-29	amwaterhouse	Can shrink graph to zero	commit \| commitdiff \| tree
2006-08-29	amwaterhouse	No stacktrace	commit \| commitdiff \| tree
2006-08-29	amwaterhouse	createMapping alreadyMapped	commit \| commitdiff \| tree
2006-08-29	amwaterhouse	Additional repaint	commit \| commitdiff \| tree
2006-08-29	amwaterhouse	jnetfile can be loaded onto alignment	commit \| commitdiff \| tree
2006-08-29	amwaterhouse	SequenceMapping updated	commit \| commitdiff \| tree
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