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2011-09-29	janengelhardt	Sequence name in VARNA windows was not correct (always...	commit \| commitdiff \| tree
2011-08-28	janengelhardt	Including of VARNAv-3.9;	commit \| commitdiff \| tree
2011-08-21	janengelhardt	JAL-913; Extending documentation; VARNA help;	commit \| commitdiff \| tree
2011-08-19	janengelhardt	JAL-913; Documentation of RNA Structure Conservation	commit \| commitdiff \| tree
2011-08-16	janengelhardt	JAL-842; Text element containing the structure is not...	commit \| commitdiff \| tree
2011-08-15	janengelhardt	JAL-891; Tooltips for Structure logos implemented;	commit \| commitdiff \| tree
2011-08-15	janengelhardt	JAL-878; Structures associated to a sequence are available via	commit \| commitdiff \| tree
2011-08-15	janengelhardt	JAL-891; Labeling of structure conservation is improved...	commit \| commitdiff \| tree
2011-08-15	janengelhardt	JAL-891; Sorting of Structure logo implemented; bug...	commit \| commitdiff \| tree
2011-08-11	janengelhardt	JAL-885; hasRNAStructure method was introduced to AlignmentI and	commit \| commitdiff \| tree
2011-08-10	janengelhardt	JAL-885; Structure conservation row is just added if...	commit \| commitdiff \| tree
2011-08-09	janengelhardt	JAL-891; base-pair logos can now be activated for structure	commit \| commitdiff \| tree
2011-08-08	janengelhardt	JAL-891; structure logo is adapted to two char's; Missing...	commit \| commitdiff \| tree
2011-08-08	janengelhardt	JAL-891; sequence logos are available on structure...	commit \| commitdiff \| tree
2011-08-03	janengelhardt	JAL-885; Multi-helix bug is solved; One should think...	commit \| commitdiff \| tree
2011-07-31	janengelhardt	JAL-885; StructureConservation row is displayed at...	commit \| commitdiff \| tree
2011-07-29	janengelhardt	JAL-885; Implementation of StructureFrequency.java...	commit \| commitdiff \| tree
2011-07-25	janengelhardt	some print statements to test things	commit \| commitdiff \| tree
2011-07-25	janengelhardt	JAL-882; VARNA crashed when non-standard gaps where...	commit \| commitdiff \| tree
2011-07-25	janengelhardt	JAL-878; Additional structures with a 'GR' tag in StockholmF...	commit \| commitdiff \| tree
2011-07-25	janengelhardt	JAL-842; toy example to insert nucleotides in sequences...	commit \| commitdiff \| tree
2011-07-25	janengelhardt	JAL-842; Implement transmitting of Jalview Sequence...	commit \| commitdiff \| tree
2011-07-25	janengelhardt	JAL-842: some bugfixes;	commit \| commitdiff \| tree
2011-07-25	janengelhardt	JAL-842; Added the TextField to edit structure in VARNA	commit \| commitdiff \| tree
2011-07-25	janengelhardt	JAL-842; trimming single structures for single sequences...	commit \| commitdiff \| tree
2011-07-25	janengelhardt	JAL-842; Give Varna frames name for window organizer...	commit \| commitdiff \| tree
2011-07-25	janengelhardt	Varna external frame bug solved	commit \| commitdiff \| tree
2011-07-25	janengelhardt	Reorganize the class structure, unfortunately breaks...	commit \| commitdiff \| tree
2011-07-25	janengelhardt	clean code	commit \| commitdiff \| tree
2011-07-25	janengelhardt	Further structure accessing feature	commit \| commitdiff \| tree
2011-07-25	janengelhardt	Changed location of VARNAv3-8b.jar; small changes	commit \| commitdiff \| tree
2011-07-25	janengelhardt	jal-842; sequence transmitting to Varna included	commit \| commitdiff \| tree
2011-07-25	janengelhardt	JAL-842, AppVarnaBinding was filled with a minimalistic...	commit \| commitdiff \| tree
2011-07-25	janengelhardt	JAL-842, Further creation of VARNA classes (probably...	commit \| commitdiff \| tree
2011-07-25	janengelhardt	Container for VARNA classes are created according to...	commit \| commitdiff \| tree
2011-07-25	janengelhardt	JAL-841; Structure trigger token in jalview.io.Alignmentfile...	commit \| commitdiff \| tree
2011-07-25	janengelhardt	'Add doc for JalviewRNASupport what was done/todo'...	commit \| commitdiff \| tree
2011-07-25	janengelhardt	'Help files updated with RNA stuff' merge; JAL-580	commit \| commitdiff \| tree
2011-07-25	janengelhardt	'Fix Group Colour bug' merge; JAL-580	commit \| commitdiff \| tree
2011-07-25	janengelhardt	'Update to Covariaton color scheme' merge; JAL-580	commit \| commitdiff \| tree
2011-07-25	janengelhardt	'Add Rfam database sequence retrieval' merged; JAL-580	commit \| commitdiff \| tree
2011-07-25	janengelhardt	Start merging of Laurens Code	commit \| commitdiff \| tree
2011-07-25	janengelhardt	New branch created and author list changed to test...	commit \| commitdiff \| tree

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