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2018-02-05	kiramt	JAL-2759 Fix errant RangeElementsIterator (unit tests...	commit \| commitdiff \| tree
2018-02-05	kiramt	JAL-2759 Rename getBoundedStartIterator	commit \| commitdiff \| tree
2018-02-05	kiramt	JAL-2759 Changes to StartRegionIterator after review	commit \| commitdiff \| tree
2018-02-01	kiramt	JAL-2759 Added in JAL-2851 fix	commit \| commitdiff \| tree
2018-02-01	kiramt	JAL-2759 use right iterator for getVisibleColsIterator	commit \| commitdiff \| tree
2018-01-31	kiramt	JAL-2759 Rationalise VisibleColsIterator and HiddenColsIterator	commit \| commitdiff \| tree
2018-01-31	kiramt	JAL-2759 Generalised HiddenColsIterator naming	commit \| commitdiff \| tree
2018-01-31	kiramt	JAL-2759 test renaming	commit \| commitdiff \| tree
2018-01-31	kiramt	JAL-2759 minor refactor to hiding bitsets	commit \| commitdiff \| tree
2018-01-30	kiramt	JAL-2759 Add missing hiddenColumns empty check	commit \| commitdiff \| tree
2018-01-30	kiramt	JAL-2759 updateForDeletedRegion no longer needed	commit \| commitdiff \| tree
2018-01-30	kiramt	JAL-2759 Rationalising hidden cols cursor, and sorting...	commit \| commitdiff \| tree
2018-01-30	kiramt	JAL-2759 comment	commit \| commitdiff \| tree
2018-01-30	kiramt	JAL-2759 Additional tests and tweaks to numColumns...	commit \| commitdiff \| tree
2018-01-30	kiramt	JAL-2759 Keep numColumns up to date	commit \| commitdiff \| tree
2018-01-29	kiramt	JAL-2759 remove unneeded cast	commit \| commitdiff \| tree
2018-01-29	kiramt	Merge branch 'feature/JAL-2759' of https://source.jalview...	commit \| commitdiff \| tree
2018-01-29	kiramt	JAL-2759 Combine findRegionForColumn code in HiddenColumnsCursor	commit \| commitdiff \| tree
2018-01-29	kiramt	JAL-2759 numColumns reset	commit \| commitdiff \| tree
2018-01-29	kiramt	JAL-2759 remove redundant hiddenColumns.clear()	commit \| commitdiff \| tree
2018-01-29	kiramt	JAL-2759 Tidy	commit \| commitdiff \| tree
2018-01-29	kiramt	JAL-2759 make a new cursor instead of resetting, updated...	commit \| commitdiff \| tree
2018-01-29	kiramt	JAL-2759 Fix unintended type change	commit \| commitdiff \| tree
2018-01-22	kiramt	JAL-2579 Moved locateVisibleStartOfSequence to Sequence...	commit \| commitdiff \| tree
2018-01-22	kiramt	JAL-2759 Various minor HiddenColumns updates after...	commit \| commitdiff \| tree
2018-01-19	kiramt	JAL-2759 Changes to getVisibleSequenceStrings after...	commit \| commitdiff \| tree
2018-01-19	kiramt	JAL-2759 Moved propagateInsertions out of HiddenColumns	commit \| commitdiff \| tree
2018-01-19	kiramt	JAL-2759 Update to getVisibleStartAndEndIndex after...	commit \| commitdiff \| tree
2018-01-18	kiramt	JAL-2759 change subtractVisibleColumns and removal...	commit \| commitdiff \| tree
2018-01-18	kiramt	JAL-2759 Updated test	commit \| commitdiff \| tree
2018-01-18	kiramt	JAL-2759 unit tests (incomplete)	commit \| commitdiff \| tree
2018-01-16	kiramt	JAL-2759 setup hideBitSet over range for hideInsertions	commit \| commitdiff \| tree
2018-01-16	kiramt	JAL-2759 Unit test for PopupMenu hideInsertions code	commit \| commitdiff \| tree
2018-01-16	kiramt	JAL-2759 Moved alignment annotation code out of HiddenColumns	commit \| commitdiff \| tree
2018-01-16	kiramt	JAL-2759 Replaced StringBuffer with StringBuilder;...	commit \| commitdiff \| tree
2018-01-15	kiramt	JAL-2759 More compact iterator usage; after review	commit \| commitdiff \| tree
2018-01-15	kiramt	JAL-2759 First pass instantiate hiddenColumns collection...	commit \| commitdiff \| tree
2018-01-15	kiramt	JAL-2759 getVisContigsIterator returns VisibleContigsIterator	commit \| commitdiff \| tree
2018-01-15	kiramt	JAL-2759 Rename hideInsertionsFor to hideList, after...	commit \| commitdiff \| tree
2018-01-15	kiramt	JAL-2759 Refactor of hideInsertionsFor after review	commit \| commitdiff \| tree
2018-01-15	kiramt	JAL-2759 Simplified HiddenColumns constructor after...	commit \| commitdiff \| tree
2018-01-15	kiramt	JAL-2759 Changed VisibleColsCollection constructor...	commit \| commitdiff \| tree
2018-01-15	kiramt	JAL-2759 Minor doc and naming changes	commit \| commitdiff \| tree
2018-01-15	kiramt	JAL-2759 Updated absoluteToVisibleColumn doc (prev...	commit \| commitdiff \| tree
2018-01-15	kiramt	JAL-2759 Rename findColumnPosition and adjustForHiddenColumn...	commit \| commitdiff \| tree
2018-01-15	kiramt	JAL-2759 Renamed BoundedHiddenColsIterator to HiddenColsIterator	commit \| commitdiff \| tree
2018-01-15	kiramt	JAL-2759 Comments and renaming for has(Many)HiddenColumns...	commit \| commitdiff \| tree
2018-01-15	kiramt	JAL-2759 Tidy up javadoc and naming in HiddenColumnsCursor...	commit \| commitdiff \| tree
2018-01-15	kiramt	JAL-2759 Updated HiddenColumnsTest::testIsVisible following...	commit \| commitdiff \| tree
2018-01-15	kiramt	JAL-2759 Update to getHiddenBoundaryRight + unit test...	commit \| commitdiff \| tree
2018-01-15	kiramt	JAL-2759 Updates following review	commit \| commitdiff \| tree
2017-11-24	kiramt	JAL-2759 update benchmark code	commit \| commitdiff \| tree
2017-11-22	kiramt	JAL-2842 JAL-2759 change to SeqPanel moveCursor	commit \| commitdiff \| tree
2017-11-22	kiramt	JAL-2759 code tidy	commit \| commitdiff \| tree
2017-11-22	kiramt	JAL-2759 performance improvements to hideColumns	commit \| commitdiff \| tree
2017-11-22	kiramt	JAL-2759 performance tweaks	commit \| commitdiff \| tree
2017-11-22	kiramt	JAL-2759 HiddenColumns test polishing	commit \| commitdiff \| tree
2017-11-21	kiramt	JAL-2759 corrected old getVisibleBlocksIterator calls...	commit \| commitdiff \| tree
2017-11-21	kiramt	JAL-2759 Remove getVisibleBlocksIterator call	commit \| commitdiff \| tree
2017-11-21	kiramt	Merge branch 'develop' into feature/JAL-2759	commit \| commitdiff \| tree
2017-11-21	kiramt	JAL-2759 BoundedStartRegionIterator test	commit \| commitdiff \| tree
2017-11-21	kiramt	JAL-2759 unit tests for VisibleContigsIterator	commit \| commitdiff \| tree
2017-11-20	kiramt	JAL-2759 cursor option for BoundedStartRegionIterator	commit \| commitdiff \| tree
2017-11-20	kiramt	JAL-2759 reinstate change from develop (JAL-2636) somehow...	commit \| commitdiff \| tree
2017-11-20	kiramt	JAL-2759 rationalise visible contigs iteration	commit \| commitdiff \| tree
2017-11-20	kiramt	JAL-2759 improvements to speed up synchronisation;...	commit \| commitdiff \| tree
2017-11-17	kiramt	JAL-2759 Move isVisible to use cursor	commit \| commitdiff \| tree
2017-11-17	kiramt	JAL-2759 tidy	commit \| commitdiff \| tree
2017-11-17	kiramt	JAL-2759 Update tests	commit \| commitdiff \| tree
2017-11-17	kiramt	JAL-2759 Convert reveal to use cursor	commit \| commitdiff \| tree
2017-11-17	kiramt	JAL-2759 HiddenColumnsCursor tests	commit \| commitdiff \| tree
2017-11-16	kiramt	JAL-2831 Removed unwanted hidden sequences checks	commit \| commitdiff \| tree
2017-11-15	kiramt	JAL-2831 Don't show cursor if position in hidden region	commit \| commitdiff \| tree
2017-11-15	kiramt	Merge branch 'bug/JAL-2811' into bug/JAL-2831	commit \| commitdiff \| tree
2017-11-15	kiramt	JAL-2811 Updated following review	commit \| commitdiff \| tree
2017-11-15	kiramt	JAL-2834 JAL-2836 temporarily disabled wrapped mode...	commit \| commitdiff \| tree
2017-11-15	kiramt	JAL-2831 ported to applet	commit \| commitdiff \| tree
2017-11-14	kiramt	JAL-2831 tidies and tests	commit \| commitdiff \| tree
2017-11-14	kiramt	JAL-2831 tidy	commit \| commitdiff \| tree
2017-11-14	kiramt	Merge branch 'bug/JAL-2811' into bug/JAL-2831	commit \| commitdiff \| tree
2017-11-14	kiramt	JAL-2811 Changed to overlay on via graphics context...	commit \| commitdiff \| tree
2017-11-14	kiramt	JAL-2811 Missed commit	commit \| commitdiff \| tree
2017-11-14	kiramt	JAL-2811 Made it work for hidden columns/seqs too	commit \| commitdiff \| tree
2017-11-14	kiramt	JAL-2831 Attempt at cursor fix for wrapped mode	commit \| commitdiff \| tree
2017-11-14	kiramt	Merge branch 'bug/JAL-2811' into bug/JAL-2831	commit \| commitdiff \| tree
2017-11-14	kiramt	JAL-2831 deal with hidden cols and seqs in new cursor...	commit \| commitdiff \| tree
2017-11-14	kiramt	JAL-2831 Added move viewport event and set up cursor...	commit \| commitdiff \| tree
2017-11-14	kiramt	Merge branch 'imp/JAL-2774' into bug/JAL-2831	commit \| commitdiff \| tree
2017-11-13	kiramt	JAL-2811 Tidy	commit \| commitdiff \| tree
2017-11-13	kiramt	JAl-2811 Working for wrapped panels too	commit \| commitdiff \| tree
2017-11-13	kiramt	JAL-2811 Add layer for cursor in SeqCanvas	commit \| commitdiff \| tree
2017-11-13	kiramt	JAL-2759 convert findColumnPosition to use cursor	commit \| commitdiff \| tree
2017-11-13	kiramt	JAL-2759 Converted getHiddenBoundaryLeft/Right to use...	commit \| commitdiff \| tree
2017-11-09	kiramt	JAL-2759 make bounds correct for left scrolling with...	commit \| commitdiff \| tree
2017-11-08	kiramt	Merge branch 'develop' into feature/JAL-2759	commit \| commitdiff \| tree
2017-11-07	kiramt	JAL-2774 Added javadoc for new event parameters	commit \| commitdiff \| tree
2017-11-07	kiramt	JAL-2774 Fix fastpaint of wrapped alignment	commit \| commitdiff \| tree
2017-11-06	kiramt	JAL-2759 fix getHiddenOffset iterating backwards	commit \| commitdiff \| tree
2017-11-01	kiramt	Merge branch 'develop' into imp/JAL-2775	commit \| commitdiff \| tree
2017-10-31	kiramt	JAL-2774 Fix repaint artefacts	commit \| commitdiff \| tree
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